RNA id: TCONS_00000542


Basic Information

Item Value
RNA id TCONS_00000542
length 730
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_000325
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26664689 ~ 26671210 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCTTTTTTCACTTTCTTCTGTGAGTATTGTGCCAAGTCCTCCACCTTTGCAAATAAGATAAGAGCACAACTGCAAGAACTCTCCCAGCACCACGGACTACAAAATGGAAGACCCGTTGGAGAAAGAGATCCCACCAACTGAAATAAAAGATTCAGATGAAGGAGGAATTCGGCGGCGACTCAGAGACAGAGATCTTTTGAAGAAACGAAAAGCAGAGGCAGAAGAAAAAGCAACCAACCAGTGGGTTTATGGGGCACAGAGCATTAAAAGAGTCAAAAAGAGGACCACTACTGGCACTCCTGGAAGGAAAGGTCGACCAAGAAAAGAACCAATAGTTATTGCAGAAGACCTTGGTCTGGCTCAGGAAGTGGATCCTTCTCCCATCACAATTCCTGTCACAGAACCTGAATTGCCCACAATAGCAGAGATAGAGCCTTTGCAACCAGTTGAGCCACAACAAGAACTGGTGCCTGAAGAAGCAATAAGTGAAAAACCTCAAGAGGAGTTTTTGATTGAGGATCTGGGGCCAGATGAGGAGGAAGATATGCCTCAAAAACACCTGGTTATCGATACAGGAGACGACGAGAAGCCATATAATGATGTGCCTGAACAGAGCTCAATTGCAATTCCAATGTTTGCTCCAGCACCTGATTCTTCTCAACCAGATAACCTAAGCCTTACTGAAAATTTACTTTTCTGAGCACCTCCTTACTATGGAAACAATAGGA

Function

GO:

id name namespace
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0048731 system development biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0048753 pigment granule organization biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0050931 pigment cell differentiation biological_process
GO:0009611 response to wounding biological_process
GO:0007275 multicellular organism development biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032438 melanosome organization biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0048066 developmental pigmentation biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005576 extracellular region cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-121214-307 Acts upstream of or within erythrocyte differentiation. Is expressed in several structures, including brain; erythroblast; hematopoietic system; lateral plate mesoderm; and pleuroperitoneal region. Orthologous to human HEMGN (hemogen).

Ensembl:

ensembl_id ENSDART00000152144

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000540 lncRNA upstream 16662 26649027 ~ 26651227 (+) True XLOC_000324
TCONS_00000536 lncRNA upstream 40202 26605214 ~ 26627687 (+) False XLOC_000324
TCONS_00002841 lncRNA upstream 84429 26580088 ~ 26583460 (+) False XLOC_000323
TCONS_00002840 lncRNA upstream 84822 26577487 ~ 26583067 (+) False XLOC_000323
TCONS_00003078 lncRNA downstream 70341 26740115 ~ 26741149 (+) True XLOC_000327
TCONS_00003079 lncRNA downstream 1043605 27713379 ~ 27716251 (+) False XLOC_000329
TCONS_00000566 lncRNA downstream 1307615 27977389 ~ 27995053 (+) False XLOC_000332
TCONS_00000568 lncRNA downstream 1361923 28031697 ~ 28036148 (+) False XLOC_000333
TCONS_00000570 lncRNA downstream 1361934 28031708 ~ 28036148 (+) False XLOC_000333
TCONS_00000535 mRNA upstream 13578 26605065 ~ 26654311 (+) False XLOC_000324
TCONS_00000539 mRNA upstream 13580 26626824 ~ 26654309 (+) False XLOC_000324
TCONS_00000537 mRNA upstream 14637 26622214 ~ 26653252 (+) False XLOC_000324
TCONS_00000538 mRNA upstream 26991 26622249 ~ 26640898 (+) False XLOC_000324
TCONS_00000529 mRNA upstream 158573 26467232 ~ 26509316 (+) False XLOC_000321
TCONS_00000546 mRNA downstream 6984 26676758 ~ 26700439 (+) False XLOC_000326
TCONS_00000547 mRNA downstream 7632 26677406 ~ 26700179 (+) False XLOC_000326
TCONS_00000549 mRNA downstream 7632 26677406 ~ 26700210 (+) False XLOC_000326
TCONS_00000548 mRNA downstream 7632 26677406 ~ 26700210 (+) True XLOC_000326
TCONS_00000550 mRNA downstream 353913 27023687 ~ 27212459 (+) False XLOC_000328
TCONS_00000518 other upstream 548265 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 1547684 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 2283192 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 2553331 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 2800924 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000557 other downstream 1043575 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 1307596 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 1314619 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 2398888 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 3161985 29831759 ~ 29860373 (+) False XLOC_000356

Expression Profile

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