RNA id: TCONS_00000548


Basic Information

Item Value
RNA id TCONS_00000548
length 4930
RNA type mRNA
GC content 0.44
exon number 23
gene id XLOC_000326
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26676758 ~ 26700439 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATTACTCTCAAAACATGTCATCTGTCAATGGCTTGTCAAATGTGAGTAGTCCATACCATAACCATAaacatgaatgtttttttccAACCATCACCATGAGCTCTAATGATAAACCTGTGTGTTCTGTGTTTTAGACCAAACCAGACAGAGTCCCGCTCAGAGATGTACAGAATGAACTgttaaatatgcaggacactcCAACTCTTATGGTTAAACATGCATCGACGCATGTGAAGGACTCAAACATGAAGCATGAAGTTGCTCTTGGTGAAAATCCATCAAGCCTAACTATCACAACAGATGTCAATAATAGTGGTCAAACTGTGGATGCCACTGATGAACATCAAGACCTCATACTAAAATCTTTTGCTTGCCTTGAAGGAGAAGTAGTAGTTGAGGATGAACCTGTACTGTCAGATATATCTGTTTTAATCGGCCATCTTGGATTGGAGGATAATGTTCCACTTCAAAGAGACCCTAATGAGACTAATATAATTGAGGACACCAAGGATAATGAGACCAGCGAAGAGCATGTTGATCATCCATACTCTTGTAGGAGCAGATCTACAGGTTACGGTGCCTCATCCATACTGCATCAGGATGTAGAGGtggaaaatgttacatttaaatcatttatgtgcTTCGGTGGAGAGGTTCTTGTTTCAGATAGCTCGGCTATCTCTAATGAATCCATTATCATAAAGGATCTTGCATCTGGAAATAACTCTCAATACAAAGCTACTCCTGTTTCTAAAGTGGACACAGAGGTTGTATCTTTAAACCCTCAACCTTTAGGCCACTCCTACTGTAACTGGAAGAGTCACGAGTCTTTTATTGAAGATGGCTGCAACATCAGTACAATCAATGATGCATCTCAATCAACTGTTGAGCACAATGTTGGTACTCAATGTGAGCACCCTGATCTCTCAGAAGGATGTTGTGGTGTATCTAATGAGCAAGAAGAGATCACATTAAAAAGCTTGAGCTGTTCTGGGGTTGAAATAGAAATTGCTGATCTATCCAAGGTGTCAGAAATGTCTTTACTTCAAGATAATCTTGCTGAGGAACAAAGTCTGAATTgtgtaaatgatgtcactgaaaaTTATGGTCAAAGCTTTGCTAGTTTGACTCCTGGAAGCAAGCATATTGATCATATGTACTGCCATGCTAAGGAAATGTCTCAGGTCCTAAATGTGTCAAGCACTGAAAACGAGCTCTTTTCCAAGTCACAATGTCTTTCGGAAAGGTCTGGAAATACAGTTGATGCAACATCACCTTTTGGACACATTACAGAGGAAAAGTTTGTGTCTGTGAGATGCCTTGAAATGAAGAAATCAAAAACACATGAGCAGTCAAGCCAACACTTGTCTGCATCGAATtgtgaaaataaaactgaaagttCAGATGTTTCAAAGTTAAACAACAGTGATGACAAACCCAAGAAGCCCAAGGATGATGAATCTTCTGTCATGACTGCAAAGCATCTGGAAGAGCTTGATCCACAGTTTATGACAGAAATAAAGGAGCCAGTTTCACACTCTGAGGAAACCCTTTGTCCTCAAGTTGCTGTTTTGGAAAATGTTGACAGAGAAACCAACATTCCCAAAGATAAGACACTGAGTTTAAAGGATGAAGAGATACACCCAGAGATTGAAGTTATGCGATTATGTGATGCATCAAGTCAAGCCATCTCAGATCATCAAGATCTTCCTAGTGCTATTGCTCTAACAAGATCTTGTACTCCTAAGACACCCACCCTAAGTAGGAGTGTTTTGCATGATCCGTCAGCCGAGAACCCAATGAGCCATCTGTGGCCCGAGCTCCCGGAGAGTCCCATGCCACCTCCTCTGTTGAACTCTACATCCCTGGTTAATGCTTTTAGCTACACACCTGTTCCTTCAGATCCACCCAAGAAAAAGGATGTGAAACCTTCTGCAGACCATCAGAATGAGTTAAATGCCCCTCCAGTTTTCGGCAATGGGCCTTTACAGGAACAACTAAGACAAATGGCTGAACTGTTGATAGTTGCTTCAGGAAAGATGGTTGTTCCTGCTCCAGCACCAGTGAATCACCACAATGTTTCAGTGGGCACTTCTCCAGTATCAACgcgcagtgtttgtgtgtggagcACACCAGTTCAGCGAATGGAGCGCAGTGTTAATACTTCAACAACGGAGATTTGCAAACAGGCTAATGTTTCTGATGCTAGCACTTCAACAGACTCCCTTCTATGGAATTTGTCTCCTGGAAATCTAGAGCATCTGTCTAGAACTGAGTTGGAGCAGAGGTTGACCTCTACGCTCATTATGGTGGAGGTTCTTACCCAACAGCTCACTTCTTCTCGGGCTCATAATCCAAGCAAAGATGCTTCGCCATCTGATCTCAGAGAAAAGCTCATCCAGACAGACCACACTGAGCTCAGACAGAATGGCACATACAGAGATTTGTATGGGACTGCCCTGGAGAGAATTCAGTGTCTTGAGTACGATCAGGAGATTCTTCACAGTCTATATAACAGCATTCAAGCAATGAGGGTTGGACTGAACTCATTTAAGTCAAGCACAGAGGATGCCATCCTCAAGATGAAACAGATTGGAGCTTCTGTTACTGCAGATCAAGAAACTTTATCTAGACAGGCCAGTCAGATGAAGTCTCTTTATGGGAGGTATAAGGGAACACTTCAAAGAATGGAGGAGAAGATGAAAGACATGAAGCAGCGTATGGATGCGGCACTAGAGGAGAAGGAAGCTGCCTTCAGCGTAACCCAGCAGTTGCGGGACCATCACATTTCCCAGGTGGCTGAGCTAGAGGACACAATTGGGTCTCACCAGGAACTAATGTCAGCACTCAAACTGGCCTACCCATCACTGGTTGTACTGAGCAAGTCATACACAGAATCCTTCAGTGCAGCAAGTGTCCATTCGAGAAGGATGCAAGAGGATAACAAAAAATTGTTTAAGGAGCTGAGAAAGGCTCAGGAACTGGTTCAGAGGATAAACCCAGTACTTCGCCATCTCCATCAGAGAACCACAACTGCCATGGAGCAGAGCAAGCAGCATTTGGAAATAAGAGACCGAGCCGTGGAAGAGAGAAACATGATGGAAAATGAACTAGAGCACATGAGGTCAAGCTTGCAAGATGCCAGTCAGCAGATTTCAGACTTGAACATGCAGCAGACCATCATGACTTCAGAGATGTTAGTCCTAAGAGAGCAGCTGAATCAGGCAGAAGATGAGCGCTTTCTGCTGCAGAGGAGAAGCACTGAGCTCTCAGCCACAGTCACGTCCACACTGGCCTCTTACGCCTTCCTGGAACAGACCCTCGCCTCTGAGACCAGCAAGTTGCAGCAGTCAGTGTGTGATGCACAGCAAGCTACAGAGAGAGCCAACTGTCTTGAAGAAGCGCTGGAAACTTCTAGGAAACAGCTAGAGGAATTTGAGGAAGCACTGTTACAGAGAGACATCTTGATTAAAGAGCTCCAAACTGAAGCTGAGATTCACCGCCGTCAGCTCGGTCAGATGGATCAACTTCAGACTGAACTCTCCAGTGCCAAAGAAATGAGTGAATTCTTGCAGGCAGAAAATGAACTGGCACGTGAACAGATGGAAGAAAGTGAGCGACTGCTGCGATGCCATTTACAGGGCCTTAGAGAGAGAAACCTGGAGTGTGAAGACCTCAAACTTGCACTGGAGCAGCTGCGGCTTGAGAAAGAGTCTCGACAGGAAGAGCTGGACACCACACGGGACAAAGCTCGGAGGATGTTGCTGGAACAGGGAGAGCAGATGGCTCAGGCGTGTAATGATGTCATGCTCCTAAACCACAGAGTTTGCAATCTCACAAACATCCTAAAGGAATCCCTAACCTCCAAGGAGTCAAAGTCCTCTGAAAACACTCTGCAAACTCATCGACATCCCTCCAGCTCTTTTGTGGATTCTATTATGGTGGCTATTATGAAGACACAAGAACCTGAAACAGAGACTTCACAGGATTCAGAGGAGAGGGAAGAGCCACAAGACTGTATTGGCAGCGAAACCAGCGCTTTTACCCGAATACTGCAAACTACACAGACTGAAGTAAAAGAGGTGAGACGGAGCCATATGCTGGAGCTGTTGTCTGATTTGGGTGAGTCCATCTCAGATCTTCTATTGAACTTAGACCAACTGAGAGTTCAGAAGGACATGGAGCAGCAGACTCTGAAACAGACCATATGTGGCCTGCAGGAGGCGATGCAGGAAGCATCTCAGACACACACCCTGGAGGTCTCGCAGCTGCGGCAGACTGTGGACAGACTGCAGGCTCAGGTGGACAAAGATGCTTTGGTCCTGCAGCAAAAAGCTCAGGATGAAAGAAACCTGAGGAAACTCTGCAGTGAGATGGAGGAGAATATGGAAGCGGCACACAAATACAAAGCAGAGAATAATGAGTTGCGTCGAGAAGTTGCTGATTTGCGTCGGCTGGTGCAGCAGACACAGGTGGAGGTTCAGGCCTTAAGGGAGGAGCTTGACCAGTCGGGCATCCAATCAGCAGCCAGTGCCAAAACCTTAGATGAAAGAATCAGACTTCTCCGAGAGGTTGAGAAGCTCAAAGCAAATTTAATGGAAACTGAGGAAAATCGTGCTAAGGTCTTGGAGAGGGCGAAAAGACATCAAAGGGTCCATGCCATGAACCAGAGTAAAATGGAGCGAGAACTACATCTGCTTGACGACATGATTGAAACTGTCAGACAGGTCAGAGGAAAATCTAAATTGTATACTGTAcatatttgggaaaaaaaaacattatttacaccatttacttttatttatttatctttttgtaTTCACAGACATTGTCCTCTATACCCGATCTGGTCAAGAGCTGTCCTGAATTACAAAAGCTTGCAGAATttcttggataagttggcgaaaGTTAACAAATGTGTTAgttga

Function

GO:

id name namespace
GO:0051988 regulation of attachment of spindle microtubules to kinetochore biological_process
GO:0051301 cell division biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-969 Predicted to act upstream of or within cell division and regulation of attachment of spindle microtubules to kinetochore. Orthologous to human SPAG5 (sperm associated antigen 5).

Ensembl:

ensembl_id ENSDART00000180366

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003077 lncRNA upstream 7303 26664689 ~ 26670103 (+) False XLOC_000325
TCONS_00000545 lncRNA upstream 7521 26668026 ~ 26669885 (+) True XLOC_000325
TCONS_00000540 lncRNA upstream 26179 26649027 ~ 26651227 (+) True XLOC_000324
TCONS_00000536 lncRNA upstream 49719 26605214 ~ 26627687 (+) False XLOC_000324
TCONS_00002841 lncRNA upstream 93946 26580088 ~ 26583460 (+) False XLOC_000323
TCONS_00003078 lncRNA downstream 39905 26740115 ~ 26741149 (+) True XLOC_000327
TCONS_00003079 lncRNA downstream 1013169 27713379 ~ 27716251 (+) False XLOC_000329
TCONS_00000566 lncRNA downstream 1277179 27977389 ~ 27995053 (+) False XLOC_000332
TCONS_00000568 lncRNA downstream 1331487 28031697 ~ 28036148 (+) False XLOC_000333
TCONS_00000570 lncRNA downstream 1331498 28031708 ~ 28036148 (+) False XLOC_000333
TCONS_00000541 mRNA upstream 6196 26667872 ~ 26671210 (+) False XLOC_000325
TCONS_00000544 mRNA upstream 7506 26668000 ~ 26669900 (+) False XLOC_000325
TCONS_00000543 mRNA upstream 7587 26667975 ~ 26669819 (+) False XLOC_000325
TCONS_00000542 mRNA upstream 7632 26667889 ~ 26669774 (+) False XLOC_000325
TCONS_00000535 mRNA upstream 23095 26605065 ~ 26654311 (+) False XLOC_000324
TCONS_00000550 mRNA downstream 323477 27023687 ~ 27212459 (+) False XLOC_000328
TCONS_00000551 mRNA downstream 323858 27024068 ~ 27209089 (+) False XLOC_000328
TCONS_00000552 mRNA downstream 352320 27052530 ~ 27212459 (+) False XLOC_000328
TCONS_00000553 mRNA downstream 352800 27053010 ~ 27209699 (+) False XLOC_000328
TCONS_00000554 mRNA downstream 370550 27070760 ~ 27212459 (+) False XLOC_000328
TCONS_00000518 other upstream 557782 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 1557201 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 2292709 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 2562848 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 2810441 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000557 other downstream 1013139 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 1277160 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 1284183 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 2368452 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 3131549 29831759 ~ 29860373 (+) False XLOC_000356