RNA id: TCONS_00000551


Basic Information

Item Value
RNA id TCONS_00000551
length 4758
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_000328
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27023687 ~ 27212459 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACCTGGAACAGCGGAACCAGCGCTGGGCTTCTTGATCCACCGAATAGCTAATATTTCAGCCAACGGGCTTCTTTCTCTTTTCAGAGACCCGGTACATGCGAATGACGAGAGCGTAGTGATTCCGTTTTTTATCAGTGTTGTTTCTTTTCCTAACGATGACGGACTGCTGCCGTTTTTGATCCTAATATTTTAATCGCTTAAAAAAGTGAGCGGACAAACATAAAGTTTTGAGCGAGTTTAGTGAGATTTGCGTAAAGAAGAGGAGAGGGAAGAGGATAGAGTCCCCCCACATGAGGGCGAGATCTGACTGAACTTCATTTAGCCATTCTCACAATATGAAGAAATGTCTGAGGAGACAGAGTTGGATGTGAGAGGCGGTGTGGTGTGGAGAGAACGAGATCGAGAGAGGGCACGCGAGTCCACGGCCAGAGCCAGCAGcaggagcagcagcagcagcagcggtgcagggggaggaggaggagaagaaggaGAAAGCTCCATGCAGTTCAGCACCAGACCGGCCAGCGCTGAGCCGGGCTTCATGGGGACATGGACACAGCAGAGCACTGACAGCAACCTCCTCTTCAGAATGTCCCAGCAGGCCATCCGCTGTACTCTGGTAAACTGCACATGTGAGTGTTTCCAGCCTGGCAAAATCCACCTGCGGACATGTGACCAGTGCAAGCATGGATGGGTAGCGCATGCACTAGACAAGCTGAGCACACAGCATTTGTACCACCCGACGCAGGTGGAGATCGTGCAGTCCAATGTGGTGTTTGACATTAGCAGTCTGATGCTGTATGGGACTCAGGCAGTACCTGTGAGATTGAAGATCCTACTGGACCGTCTGTTCAGTGTCCTTAAACAGGAAGAGGTTCTACACATTCTTCATGGCTTGGGCTGGACTCTGAGAGACTACGTTAGAGGCTACATATTACAgGATGCTGCAGGCAAGGTTCTGGACAGATGGACTATAATGTCTCGGGAAGAGGAGATCATCACACTGCAACAGTTTCTGCGCTTTGGCGAAACAAAGTCTATTGTGGAATTGATGGCCATTCAGGAAAAAGAAGGTCAGGCAGTCACAGTGCCCTCATCAAAGACTGATTCTGGAATTAGAACTTTTATTGAAAGCAACAATCGCACACGTAGTCCTGGCCTTTTATCACACCTAGAAAACAACAGCCCTTCTAGCATTCACCATTTTGAGAACATCCCAAACAGTTTGGCTTTCTTGCTGCCCTTCCAGTACATCAACCCGATGTCAGCCCCTATGCTAGGGCTTCCACCAAATGGACTTAGTATTGAACAATCAGGTCTTAGAATGAGGGAGCCAAACCTGCCAAATCAGAGTGACCCAGTGGAGGCCAGCGAATCTGAAGTTTCACTCTCACCATTTCATAGTGGTCAAAGCCCCAGTCGAGGAGTAATGGGGACCTTACCCAATGCCATCGAACCTAAGACAGAACCCAACAGAGCTTCTCCTATCTCTCCAACACCATCTACACTGCAGTCCCAGCAACCACAGACACCAACACAACAGACACAGGGGCAACAACAGTCAAGTTCTCTGAACAATCACCAGATTCATcaccattttgaaaaaaatgaacaGTCAAAAACTATAACACACTCTTCTTTCTCCTCCAAAATGCATCGCATACGTCGCATGGGTGCGACATCACGTAAGGGTCGTGTCTGCTGCAACTCCTGTGGCAAGACTTTCTATGATAAGGGTACTTTAAAGATCCACTACAATGCTGTGCATCTGAAGATTAAGCATCGTTGTACTATTGAAGGCTGCAATATGGTCTTCAGCTCTCTGCGTAGTCGTAACCGACATAGTGCTAATCCCAATCCTCGCCTACACATGCCTATGCTGAGGAACAATCGGGACAAGGACCTTATTCGCTCCAGCTCTGGGACAGCCACTCCTGTCATATCAAGTACCAAAAGTGGCTTCAATCTAACTAGCCCAGGGCGGCCACCATTAAGTTTTGCCACCCCTCCTCTTGAGCCTATGATACAGTCACCTCTGCAGAGCCCACTTGTGTTCCCTTCTTTAAAGTCTGTGCAGCCAGTGCAACCTGTGCCACCCTTTTATCGCACACTACTTTCTCCTGCTGACCTAGTTAGCCCCCCAGTCTCTCTGCCTACCAGTCCAATTCTGCCTACAACAGCTAACAGCACATCTCTTACGGACCAGCAACAGATGTTAGCTGTTAGCTCCCTTAGCATGCATGTATCCGAAACATCACCATTTTCTCATCGCTTACCCACAAATCACAGTACCCAAGATTCCATTATTCTTGATCCTATGCCTAAAAAGAAGCCTCGCAAGTCTAGCATGCCAGTAAAAATAGAGAAAGAGGTGATAGATGTTGCAGATGACTATGATGAcaaagatgaggatgatgatgatggagacagttgtcaccatcaccatcatcaaCCATCCAGCATCCATAATGTTAATGGCaactgcaacaacaacaataatggcAGTAGCAGCAGCAGTCATCATTGTGGTGGTAGTGGACATGAGTCTCCATCACACGATGAAATGAGTCCCAGTCAAGCACTTAGAGGCATGCTCCATCCTGAACAAGAAGAATGCACTGGCAGTCATGGTGGTAGAGGCCATGGTGACCTACGCTGTATTGACAGCTTTACCTCTGAGGACCAAGATCATGAGCGTGACTTTGAAAATGAGTCTGAGACATCTGAATCCAAAATGCTGTACCGCGATGAGCTGATGGACACTGACATAAATCAGACTGCTCTGGGGAAAAATATGGATAAGGAACACCAGGGGACAGAAGATGACCAACATCTAAGAAAAGATTTGGATGAACACAGCCATTCCCCACCCTCCCAACACCAGCCTGTTATCAAAATCAAAGAAGAGATCAATGATCCTACTTATGACATGTTCTGCATGGGTCAATACAGCCTTTACAATGGAGGTATGGCAGCTGCCGCTGCAGCTGCTGCCAGCATGGCTGCCTTACATGAAAGTTTCATCTCCTCTATGAGCTATGGAACAAGTACACCAAAGTTCCCCTCCCAGTCACCTGAGGGTGATCTCTGCTCTAGTCCTGATCCCAAAATCTGCTATGTCTGCAAAAAGAGCTTTAAAAGTTCCTACAGTGTCAAACTGCATTACAAGAATGTTCACCTAAAAGAGATGCATGTGTGCACTGTCTCTGGATGCAATGCTGCTTTCCCCTCCAGGCGGAGCAGAGATAGGAGAATGTCGGATAGGGaactaaataattaaagaaaaggGACCCTTTTTGACTGCATCAACCATGGCACTGCTGACACAGCTCCAACATCAACCTGCATCGCAAACTACTGACCAAAGAGCTGGATGACATTGTCTTAGACCCCCAGCTTACAACTTTGCCTAAACAGCTGCGTGCTGAGTTCCTGTCAAAGATCTATGCCGACCACCACACAGGACTGGAGGGTGTGGGGGGTTTTGACAATGGACCACCACAAAGCAGAGGACATGAGGGAATGAGATCCCAAGTCGCTAGAGAATATTCACACAGCAACGGCTATTGCCATGGCCCTAATGATGACTATGTGGTTCTGGACCTGAGCACTGCCTCTAGTGTACAGTCAAGTGGCAGTGTGCAATCCTCACATGAGTCTGATGAGGGCAGTGATGAGGGAATTTTGCTGGATGACCTAGAGGATGCTAGTGACACTGAGGACTGCACCCCAAGTACTGGGGCTCAGAGACTGTCAATGGAGGGGAAGAATAGAGAGGAAGCCGGGAAGGAAGAAAGAGAAGGAGAAACAGATGAAAGGATTCTGCACTATGACCCCTCTGTTTCACCATCCATCTTGGCATCCAGTGGAGGTAATGGCACAGGAGGCATTCTTTGCACCATCTGCCACAAACTGTACAGTAACAAAGGGACCCTCCGGGTGCACTACAAGACTGTCCACCTCCGTGAAATGCACAAATGCAAAATACCTGGCTGTAACATGATGTTTTCTTCTGTAAGGAGTAGAAACAGGCATAGCCAGAACCCCAACCTACACAAAAAGGCCCCTTATACCACAATGATTGATTAAAACATTCATTCCTATTTAGCCTATTTCCACAAGCACCGTATCTATAAAAGAACCCTCTCAATTCACCCCCACCCCCAAATGCCTTTTTTAGTATTGTgccattttgacatttttgctttTGGAAGCAAGTTCTGAACAATATAACATCACAGTGTCATAACATCATAGTTCCCTCAGTTCCCTACACAAACCTCCCCTCAATCTCTTATTTGTGAGCCTTGCCTGCAGAAATGTTGAtgaggaaaaaacaaaaacaaaaaaaaaactaaactaaataaaaacgttTGTATTTGTGTAATGACAGCTTTTAAAAGAATCCCTTACAAAAGCATGACTGACTAAAATATGTAAATACTAATGTTGTGAGGGGCTTGGTGTGAAACAATTGTATTGATGGTtgatattttgttcttttttgtttgtttgtttttatttggtcTGAGACTTTCACTTCAAAAGGAAAAGAAGGCAAGACAAAGTAGCATCTGCTTAGCTTGATTCATTTATATTGgcttaaaatgttttatcttaaaaaaagaaatacatgtGACTTGTGACTTGTTTTATCTTCATGTTAGGTAAACAGATGGAGCTGGCATGCTTTTAGCtctaacaaaatacttttttctCACAATcatatctttatttaaaaaaaaaaaacaaaaaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060485 mesenchyme development biological_process
GO:0039020 pronephric nephron tubule development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5784 Predicted to enable transcription cis-regulatory region binding activity. Acts upstream of or within developmental pigmentation and pronephric nephron tubule development. Located in nucleus. Is expressed in several structures, including centrum; gut; hypodermal cell; nervous system; and pleuroperitoneal region. Used to study urinary tract obstruction. Orthologous to human BNC2 (basonuclin 2).

Ensembl:

ensembl_id ENSDART00000102322

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003078 lncRNA upstream 282919 26740115 ~ 26741149 (+) True XLOC_000327
TCONS_00003077 lncRNA upstream 353965 26664689 ~ 26670103 (+) False XLOC_000325
TCONS_00000545 lncRNA upstream 354183 26668026 ~ 26669885 (+) True XLOC_000325
TCONS_00000540 lncRNA upstream 372841 26649027 ~ 26651227 (+) True XLOC_000324
TCONS_00000536 lncRNA upstream 396381 26605214 ~ 26627687 (+) False XLOC_000324
TCONS_00003079 lncRNA downstream 504290 27713379 ~ 27716251 (+) False XLOC_000329
TCONS_00000566 lncRNA downstream 768300 27977389 ~ 27995053 (+) False XLOC_000332
TCONS_00000568 lncRNA downstream 822608 28031697 ~ 28036148 (+) False XLOC_000333
TCONS_00000570 lncRNA downstream 822619 28031708 ~ 28036148 (+) False XLOC_000333
TCONS_00003080 lncRNA downstream 1263110 28472199 ~ 28473413 (+) True XLOC_000335
TCONS_00000546 mRNA upstream 323629 26676758 ~ 26700439 (+) False XLOC_000326
TCONS_00000549 mRNA upstream 323858 26677406 ~ 26700210 (+) False XLOC_000326
TCONS_00000548 mRNA upstream 323858 26677406 ~ 26700210 (+) True XLOC_000326
TCONS_00000547 mRNA upstream 323889 26677406 ~ 26700179 (+) False XLOC_000326
TCONS_00000541 mRNA upstream 352858 26667872 ~ 26671210 (+) False XLOC_000325
TCONS_00000558 mRNA downstream 504291 27713380 ~ 27733179 (+) True XLOC_000329
TCONS_00000559 mRNA downstream 599827 27808916 ~ 27861144 (+) False XLOC_000330
TCONS_00000560 mRNA downstream 616891 27825980 ~ 27861148 (+) True XLOC_000330
TCONS_00000561 mRNA downstream 658617 27867706 ~ 27894817 (+) False XLOC_000331
TCONS_00000562 mRNA downstream 659205 27868294 ~ 27894021 (+) True XLOC_000331
TCONS_00000518 other upstream 904444 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 1903863 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 2639371 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 2909510 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 3157103 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000557 other downstream 504260 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 768281 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 775304 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 1859573 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 2622670 29831759 ~ 29860373 (+) False XLOC_000356

Expression Profile

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