RNA id: TCONS_00066069


Basic Information

Item Value
RNA id TCONS_00066069
length 1803
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_033771
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 28612671 ~ 28623292 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatggtatggtttataatatgattaatacaaatgaaacctctttaacattattaaatgtagatgctaaatcactgatatgtgttggcttacGCAGAGTCAAAGTTCTAAagttatctgctgctgctttcagtagtatggcaataaatgtcatataaaatgCCATTcgaactcacattattagcattttacactgaataaagtgcatgaggtgtacctgaggtgatcatagttcatcctgttgttcagctgcgagaaatagaagccgtctctaaaattataaatttcaggtgttggttaggacaaaaacttcttttaatatggCAAACATTTCGTGTGCTGTTGCTTTTGGTTTGAAAGGGGTTCAAATCAGCATTTCGGCTAGATAGTGAAGCACActcctgttggtgtcgtcaatctggcaacttgcACTTGCATGTAGCTGTCAGAGGAGTCGAGTGAAAATCTGTTTTGATCCATGTGTGCAATACCCTTTTCAACccctgggtgtcaaacttgcattcTGCCCCTTTAAATGACTAATAAGATGTCTTGCATGTTAATTGTGACTGACATTATTATATCATCAagtgttgttttgtttaattttcactggCTGCTACAATCCTATTTTGGCCAATTGCCTTTACAGGATGCTCCAGTACAGCCACATGTCCGTGAGGCTCTTGCTCGTCCACGTTTGGCCCATCATGCTTTGCGGCCTTCACAAGGGAGCAGTCAGAGGATCATCGGTGATCTGCGCAGTGTCAAATGGAGCACCAGGCGAGAGGAACGCTATCGCATCCTGTCCAGCCACCGGGCTGGACTGCCGTCAGAGCCTGCTCctgctggaggaggaggaggaggagaggagaATCATGACAGCCACACAGAGAGCCGTGACGGACTGCCTCTGGGAGAAGTGCAAGTGTTTGATATTCTGCATGAGGAGGAAGATGTCAAAGTGCCTGGCAAGATGGTTGTGTCTGACCCGGAGACAATCCTGTGTAACTCTGTGAAGATGATCCGTGAGAAGCTGAGTGTTTCAGGCGCTGGACTTGGGACTGAACATCGAGAGAAAGAGGATGATTACGTGTATGATTTGTACTATCAGGAAACGGCCACACCAGGCTGGATCCAGGACATTCTGTCCGTCAGACCCTACTCGCAAGAGGGAGAGCTGGTGCCTGACGAAGTAGCCTGGGAGGAAGAGGTGtatgaagatgaggatgatgagaATGCAGAAGCCAACTGGAGGAATGACTACCCGGAGGAAAGCAGCGAGGGTGACAGTGAAGGAGAGGAGCGTTACGGAGGCTGCTGGAGCGAGGAGCACTCGTACAGCAGGAGGAGCTGGGAATGCTACAGGCGGGACATGATAGATGAGTTGGAGAATGACaaagatgaggatgatgaagagcGAGAGTATAATGATTCTGACTGAGCGCCTCTGTGTGTGGTCAAGAGcatgagagagcgagagagaggccCTTTTTACTGACGTGTGTTGAGTGAAGCTGTATGTTCTTTTGTCTAAGTGAATGTATGTAGTAGCCCATGTGCGTGTTCTTGTGTGGGTTGCTTTGACTTGCGCGCTAGTGAGATGAGCGATTTACTATTTGCGATATTTTGCGATTGTTTGATGTGAAGATAGTATGGAGAGAAAATGGTGATATTTTGAGTTTGTGTACGTGTGGGGTGATTTGTGTTGTCAGTTATGTGTGTAGTGTTTATACGTTCCCCGAGAGCAAGGGGtgaaaaaacaaaatactgtaaatatgtagatgtgtataaaaaaaaataaa

Function

GO:

id name namespace
GO:0021552 midbrain-hindbrain boundary structural organization biological_process
GO:0015031 protein transport biological_process
GO:0061053 somite development biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-32 Acts upstream of or within midbrain-hindbrain boundary structural organization and somite development. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Is expressed in axis; central nervous system; eye; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy. Orthologous to human SLC7A6OS (solute carrier family 7 member 6 opposite strand).

Ensembl:

ensembl_id ENSDART00000159339

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066064 lncRNA upstream 425352 28058202 ~ 28189681 (+) True XLOC_033767
TCONS_00068575 lncRNA upstream 526016 28058202 ~ 28089017 (+) False XLOC_033767
TCONS_00068859 lncRNA upstream 782710 27823531 ~ 27832323 (+) False XLOC_033764
TCONS_00068576 lncRNA downstream 438904 29062175 ~ 29064397 (+) True XLOC_033780
TCONS_00066088 lncRNA downstream 462291 29085562 ~ 29090937 (+) True XLOC_033782
TCONS_00066099 lncRNA downstream 558805 29182076 ~ 29182727 (+) True XLOC_033789
TCONS_00068862 lncRNA downstream 655296 29278567 ~ 29280954 (+) True XLOC_033790
TCONS_00068577 lncRNA downstream 838094 29461365 ~ 29462263 (+) True XLOC_033793
TCONS_00066058 mRNA upstream 556513 27898091 ~ 28058520 (+) False XLOC_033767
TCONS_00066061 mRNA upstream 556513 27976448 ~ 28058520 (+) False XLOC_033767
TCONS_00066062 mRNA upstream 567813 27977065 ~ 28047220 (+) False XLOC_033767
TCONS_00066059 mRNA upstream 579959 27898208 ~ 28035074 (+) False XLOC_033767
TCONS_00066063 mRNA upstream 587535 28006096 ~ 28027498 (+) False XLOC_033767
TCONS_00066071 mRNA downstream 101648 28724919 ~ 28837318 (+) True XLOC_033772
TCONS_00066072 mRNA downstream 278515 28901786 ~ 28999142 (+) False XLOC_033773
TCONS_00066073 mRNA downstream 337247 28960518 ~ 28989859 (+) False XLOC_033773
TCONS_00066074 mRNA downstream 337247 28960518 ~ 28993584 (+) False XLOC_033773
TCONS_00066075 mRNA downstream 337247 28960518 ~ 28993918 (+) True XLOC_033773
TCONS_00066067 other upstream 153455 28461463 ~ 28461578 (+) True XLOC_033770
TCONS_00066066 other upstream 356407 28255096 ~ 28258626 (+) True XLOC_033769
TCONS_00066065 other upstream 359856 28253644 ~ 28255177 (+) False XLOC_033769
TCONS_00066060 other upstream 701978 27912938 ~ 27913055 (+) True XLOC_033768
TCONS_00066057 other upstream 735440 27848010 ~ 27879593 (+) True XLOC_033766
TCONS_00066070 other downstream 101639 28724910 ~ 28733520 (+) False XLOC_033772
TCONS_00066080 other downstream 390868 29014139 ~ 29015168 (+) True XLOC_033776
TCONS_00066092 other downstream 510133 29133404 ~ 29140443 (+) True XLOC_033785
TCONS_00066097 other downstream 553653 29176924 ~ 29182744 (+) False XLOC_033789
TCONS_00066103 other downstream 879603 29502874 ~ 29506131 (+) False XLOC_033795

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU447498 True 1207 lncRNA 0.53 4 NW_019172905.1 73999 ~ 80077 (-)