RNA id: TU206387


Basic Information

Item Value
RNA id TU206387
length 443
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G152336
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6000129 ~ 6002642 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagatttAGAGGTCCAAGCCAGACTCATCTTCAAGCCAGATATATTCTAAGACCAACCAGGCCAGACTCAGTCTactggctgctgctctgcacttgtgACAGCGAGACAATTTTGACCTTGTCATGTTTTAATCTCgagagatctcgtcacacctcttAACGTTTAGCAGAAGAGAGACTGTGTACTGTTCCGACCTGTTTGATGGTGATGGCAGGCCTCCAGTCTTTGTCCTCCTCCAGGATGGACAGACACACTGTGCCAGATGGGTAGACATTCGGGTGGAATATTGGTGGCTCAAACTTGCATTTGGGTGGTGAAGAAGGGTAGTCATCTTTGAACAGCATTCTGAGTTTGTAGAGTCCTCCCTCCCACAAGGTTCCTTTCTTCCCAGGAATGGCACACTCCCAGTTCATCAGATTCATGGTCCCATCAGGATTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206238 lncRNA upstream 42812 5953428 ~ 5957317 (+) True chst12a
TU206220 lncRNA upstream 125826 5873764 ~ 5874303 (+) True G152201
TU206194 lncRNA upstream 169466 5794124 ~ 5830663 (+) True G152179
TU206160 lncRNA upstream 228262 5725886 ~ 5771867 (+) False G152149
TU206156 lncRNA upstream 269860 5725886 ~ 5730269 (+) False G152149
TU206405 lncRNA downstream 14575 6017217 ~ 6017471 (+) True G152350
TU206451 lncRNA downstream 91277 6093919 ~ 6094215 (+) True G152387
TU206483 lncRNA downstream 146623 6149265 ~ 6149583 (+) True G152415
TU206592 lncRNA downstream 356427 6359069 ~ 6359290 (+) True G152483
TU206594 lncRNA downstream 369593 6372235 ~ 6372529 (+) True G152485
XM_039825195.1 mRNA upstream 45619 5950426 ~ 5954510 (+) False chst12a
XM_039825193.1 mRNA upstream 55948 5918866 ~ 5944181 (+) True card11
XM_039825194.1 mRNA upstream 55948 5927116 ~ 5944181 (+) False card11
XM_039825021.1 mRNA upstream 95247 5887753 ~ 5904882 (+) True mmd2a
XM_039823945.1 mRNA upstream 128041 5845125 ~ 5872088 (+) True LOC120573990
XM_039826251.1 mRNA downstream 20592 6023234 ~ 6034080 (+) True LOC120575455
XM_039824609.1 mRNA downstream 34616 6037258 ~ 6041651 (+) True mief1
XM_039826318.1 mRNA downstream 53116 6055758 ~ 6068746 (+) True LOC120575492
XM_039826319.1 mRNA downstream 66294 6068936 ~ 6071932 (+) True atf4b
XM_039826323.1 mRNA downstream 80135 6082777 ~ 6093726 (+) True adsl
TU206243 other upstream 46764 5950424 ~ 5953365 (+) False chst12a
TU206154 other upstream 269860 5725886 ~ 5730269 (+) False G152149
TU206143 other upstream 370857 5626227 ~ 5629272 (+) False slc29a4
TU206111 other upstream 449583 5549291 ~ 5550546 (+) False G152125
TU206083 other upstream 535826 5461965 ~ 5464303 (+) False rbx1
TU206798 other downstream 1268351 7270993 ~ 7273343 (+) False dexi
TU206790 other downstream 1337351 7339993 ~ 7356838 (+) True emp2
XR_005641999.1 other downstream 2070366 8073008 ~ 8073081 (+) True LOC120575508
XR_005642011.1 other downstream 2070594 8073236 ~ 8073305 (+) True LOC120575520
TU207102 other downstream 2124623 8127265 ~ 8127981 (+) True G152892

Expression Profile