RNA id: XM_039823945.1


Basic Information

Item Value
RNA id XM_039823945.1
length 6420
RNA type mRNA
GC content 0.54
exon number 44
gene id LOC120573990
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5845125 ~ 5872088 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCATATAAAGGGGAATGCGGGGACGATGTGGACCCCATGCCGTTCCTGGTTCCCTCAGAGAAGGAGCGCCTGGATGCCATGAATAAACCATACGACATCAAGCGCTCCTGCTGGGTCAAAGATGAGAAGGAGGCTTTCATTGCTGGGGAGATTCAGTCTGAAGATGGGGACAAAGTCACCGTCAAGACCACCAAGAACACTACTGTGACTGTGAGGAAGGATGACGTCCAGCAGATGAACCCTGCTAAGTTCTACCAAGCCAGCGACATGGCCAACCTCACTTTCCTCAACGAGGCCAGCGTCTTGGAAAACCTGCGCAGCCGCTACGTCAACATGAGGATCTATACCTACTCAGGCCTCTTCTGTGTGACGATCAACCCGTACAAATGGCTACCCATCTATGGCGCTAAAGTGGCCCAGATATACAAGGGGAAGAAACGCAACGAAGTTCCTCCTCACCTCTTCTCCATCTCTGACAACGCCTACCACGACATGCTGATGGAGCATGAGAACCAGTCTATGCTGATCACTGGAGAATCTGGTGCTGGCAAGACTGAAAACACCAAGAAGGTCATCCAGTACTTCGCCAATGTTGGAGCTTCTGGGAGCAAAGCCTCCGACTCCAAGgGCTCTTTGGAGGACCAGATCATTCAGGCTAACCCAGTGCTGGAGGCATTTGGCAACGCCAAGACCATTAGGAACAACAACTCCTCACGTTTTGGAAAGTTCATTCGCATTCACTTTGGGCCGACAGCTAAGCTGGCTGGCGCTGACATTGAGAGCTATCTGCTGGAGAAATCGAGAGTGATTTCCCAGCAGGCTGCTGAGAGAGGATACCACATCTTCTACCAACTCCTGTCTGGAAGGAAGCCAGAATTCATAGAGGCTTTGCTGCTGAAGCCTGACCCCAAacagtatgtgtgggtgtgtcaggGAGTCACCGTGGTGGATAACATGGATGATGGGGAGGAACTGCTGCTCACTGATGTGACCTTTGATGTCCTTGGCTTTACTTCTGATGAGAAGATGAGTGTGTACAAGTTGACTGGAGGCATAATGCACTTCGGTAACATGAAGTTCAAACAAAAAGCCAGAGAAGAACAGGCTGATGTGGATTCCACTGAGGTGGCTGACAAAGTCGCCCACCTCATGGCCATCAACTCTGGGGAGCTGCAGAAGGGCATAACGCGCCCCAGGGTCAAAGTTGGCAACGAGTTTGTGACCAAAGGTCAGAACCAGGACCAGTGTGTGTACTCCATCGGCGCTCTGGCAAAAGCCATCTATGACCGCATGTTCAAGTGGATGGTGACCCGCATCAACAAGACCCTGGACACCAAGATGCAGCGGCAGTACTTCATAGGAGTGCTAGACATCGCTGGGTTTGAGATCTTTGAGCTCAACAGCTTTGAGCAGCTGTGCATCAACTTCACCAATGAGAAGCTGCAGCAGTTCTTCAACCACCACATGTTTGTGCTGGAGCAGGAGGAGTACAAGAAGGAGGGCATCGACTGGGTCTTCATCGACTTCGGCCTGGACCTGCAGGCCTGCATCGACCTGCTGGAGAGGCCAATGGGGATTTTTTCCATCCTGGAGGAGCAGTGTGTGTTTCCAAAGGCGACAGACGCAACCTTCAAAGCAGCTCTGTATGACAACCACCTGGGCAAGTCCTCCAACTTCCTAAAGCCCAAAGGGGGGAAGAAAGGACCCGAGGCCCACTTTGAACTGGTGCACTATGCTGGCACTGTGGGCTACAACATCGCTCACTGGCTGGAGAAGAACAAAGACCCTCTGAATGAGACGGTGGTGGGACTCTTCCAGAAGTCCTCCATGCCTCTGCTGGCTCTGCTCTTCAAAGAGGAGGAGGCCGGCGCAGGAACCAAGAAACAGAAGAAAGGGTCGTCCTTTCAAACTGTCTCCAACTTCTACAGGGAACAACTGAACAAGCTGATGAGCACCCTGCGAAGCACTGCTCCCCACTTTGTCCGCTGCATCGTGCCCAATGAGTTCAAGAAGTCAGGTGTGACAGATAACCACCTGATCCTGCACCAGTTAGCATGTAACGGCGTGCTGGAGGGCATCCGTATCTGCAGGAAAGGATTCCCCAACAGACTACAGTACCCAGAATTCAAACAAAGGTACTATATCCTCAACCCTAACGTCATCCCTaagggatttgttgacaacaaGAAGGCCTCTGAGCTCATCCTGAGTTCAGTTGGCCTGGATAATATGGAGTACCGCATCGGCCACACCAAGGTGTTTTTCCGCGCAGGAGTCCTGGCAAAGATGGAGGACATGCGCGACGAGAGGCTGGCAAAGATCCTGACCATGCTGCAGGCTCAACTTAGAGGAATTCTGATGAGGGTCGAGTTTAAGAAGATGGTGGACAGACGaATTGCACTGATGGCCATCCAGCGAAACGTGAGGAAGTTCCTTCAGTTACGCTTCTGGGGCTGGTGGAAACTCTACACTAAGGTGAAGCCTCTGCTGATGGTCGCCCGTCAGGAGGAGACCTACAAGGCAAAGGAAGAGGAGCTGAGGGTGGCAGTGGAGAGAGTCAAAGAGCTGGAGGGCAAGATCAAAGATGTGGAGGGGAAGATGGTCACTCTGTCACAGGAGAAGAACGACCTCGCCCTGGCGCTGGCTGCAGAGCAGGACACGCTGGGTGATGCTGAGGAGCGCTGCACCCAGCTGATGCACCAAAAGGTCCAGATGGAGGAGTCATTGCAGGATCTGCGTGAGCGcctggaggaagaggaaggcaaCACGGCCTCCCTCCATGGCCAGAGGAGGCAGCTGGAGGGGGAACTGACCGAGCTGAAGAGAGACCTGGAGTCTCTGGAGTCCACACTGGCCAAGACTGAGAAGGAGAAACAGGGTCTGGACTTCAAGGTGCGAACTCTGACGGGTGACCTGAGTCAGAGAGACGACCATGTGACCAAGCTGCAGAAGGAAAAGAGAGCTCTGGAGGAACTGCAACAGAAAACTGTGGAGGATCTCCAAACAGAAGAAGACAAAGTTAACCATCTGACCAAGACCAACAGCAAGCTCAACTCCCAAGTGAATGAGctGGAGGACTGCTGGGAGCAGGAGAAGAGGATCAGGGCGGAGGTGGAGAAAGCGAGGCGGAAGGCAGAGGGAGACCTGAAGATGACCATAGAGAACCTGAACGAGATGGAGAGCGCTAAGCTCGACCTGGAGGAGGTTATTAAGAAGAGGGACTTCGAGATCAACAACATGAACTCGAAGCTGGAGGACGAGCAGGCTCTCAGCTCCATGCTCAGCCGCAAGCTCAAAGAGCACCAGGGCCGCATAGAGGAGCTGGAGGAAGAGCTGGAAGCTGAACGAGCCATGAGAGCCAAGGTGGAGAAGCAGAGGGCCGAGCTATCCCGAGATCTGGAGGACCTCAGTGATAGGCTGGAGGAGGCGGGAGGAGCCACCGTCGCCCAGATCGAGCAGAACAGGAAGCGGGAGACTGACCTGCTGAAGCTGAGGCGGGAGCTGGAAGAGGCAGCGCTCCAATCAGAGACCACGGCGGCAGCGCTGAGGAAGAAGCACTCAGACGCGATGGCTGAGCTGGGCGAGCAGCTGGAGAACCTGACCAGGCTGAAAGTTAAACTGGAGAAGGACAAACAGAGCATGAAGGCGGAGATCGAAGACCTTAACGTCACCATGGAGGCCACTCAGAAAGCAAAGATGAACTCTGAGGTCCATGCCCGTAAACTGGAGGACAATCTGGCAGAGGCTAATGCTCGCCTGGCTGAGATGGAGCGCAATCAGACTGAGCTCAACGCTGCCAAAATCCACCTGACcacgGAGAACAATGATCTGAGCAGGGAGTTGGACGACGTGCAGAGTAAGCTGACCCAGGTGACCAGGCTGAAGGCCTCCCTCACCACGCAGGTCGACGAGCTCAAGCGACAGGTGGACGAGGAGAACAAGGGCCGTAACACAGCGGTGATGGGCCTGGCCAACGCCCGCCACGACCTCTCCCTGCTGAAGgagcagctggaggaggagtCCGAAGCCCGAGGGGAGCTGCAGCGCCTCGTGTCCAAGCTCAACGCCGACGTCACCTCCTGGAGGAGCAAGTACGAGACGGACGCCATCCACCGCACCGAGGAGCTGGAGGAGACCAAACGCAAACTAGCAGTGCGTCTgcaggaggctgaggaggcAGCGGAGGCGGCACAAGCCAGAGCTGCCAGCCTGGATAAGGTCAAGCTGAGGCTGCAGGGAGAGGTGGAAGATCTCACCATAGACCTGGAGaggTCcaacgcagcagcagcagctctggaTAAGAAGCAGCGAGTTTTCGACAAGATGGCGGCCGAGTGGAGCCAGAAGAATGAGGAGCTGCAACTGGAACTGGACAACAGCCAGAAGGAGAGCCGCTCCTACATGACGGAGCTCTACAAGCTGAAGACGGCCTACGAGGAGAGCCAGGATCACATAGAGACCGTCCGCAAGGAAAACAAAACCCTCTCAGAGGAGATCAAGGAGTTGGTGGACCAGCTCGGGGAAGGAGGCCGCAGCGTCCACGAGCTCCAGAAGGCAAAGAAGAAACTGGAGGTGGAGAAGGAGGAGCTGCAGCTGGCTCTGGATGAGACTGAAGCTGCACTCGAGGGGGAGGAAGGTAAGCTGGTGCGTGTGCAGCTGGAGCTCGCTCAGGTCAAGGCTGACATCGACCGCAGAATCCACgagaaggaggaagagtttGAAGTCACCAGAAAGAACCATGCGCGTGCGGTAGAGTCGCTGCAGGCCAGCCTGGAAGCAGAGGCCAAAGGTCGCGCCGAGGCTTtgaggatgaagaagaagatggaggGAGACTTGAACGAGATGGAGATCCAGCTGGAGCACGCCAACAGGAACAACGCTGAGCTGGTCAAAACCCTCAagaagctgcagcagcagatcaAAGATCTGCAGGTGCAGATGGACGAGGACGCCCGTCAGCACGACGAGCTGAGGGAGAAGTACAGCCTCCAGGAGCGGCGGCTGTGCCTGATGcaaggagagatggaggagctgagaggAGGCCTGGACGCGTCCGAGAGGGCCCGCAAACTCATCGAGCAGGAGCTGGTGGAAACCACGGAGAGGTTCAGTGAGACCAGCATGCAGAACCAAAGTCTGACCATCCTGAAGAGAAAACTGGAGGCTGACCTCGCCCGGCTGTCCAGTGAGAATGAAGAGCTGATCTCAGAGTTTCGCTCTGCTGATGAGAGAGCCAAGAAGGCTGTGACCGATGCAACGCGACTGTGTGAGGAGCTTCGACAGGAGCAGGACCGGAGCTCCCACCTGGAGAAGATTAAGAAGAACCAGGAGCAGAACCTCCGAGACCTCACACtgaggctggaggaggctgagcaGCTGGCGCTGAAGGCTGGAAAACGCACCATCCAGAAACTGGAAACCAGGATCAAGGAGGTGGAGAATGAGCTGGATCAGGAGCAGAAGCGCCACATGGAGACAGTGAAAAACCTCCGTAAGGGAGAGCGTCGGCTCAAAGAGCTGATCTTCCAGACGGAGGAAGACCACAAGACCAATCAGCGCATGCAGGAGCTGGTGGAGAAACTCCAGAACAAGCTCAAGTCCTACAAACGCCAGATAGAGGAGGCTGAGGAGCAGGCCAACAGCAGCCTGTCTAAATACAGGAAGACGATCCATGAGCTAGATGATGCTGAGGAGCGTGCAGAAGTGGCAGAGATGACCCTAAATAAAATGAGGATGAGGAACCGAGCCTCCACCAATAAGGGCTTCACCACGGTGGAGATCGTCCAGGTCAACAAGCCTACCAGTGGAGGACAGGACGGGTAGAAGGGAAAAGAGACACACACTAACGCACACACAACGAGCAGAGTGACACACACCCATTCAGCCCTCCAGAGGACGCTTGACTGAGGAAGTATGAGCTCAGGCTCCCCCGGGGAAAGTCTTAAAAAGGCCCAGACAGAGCTACTTAGAAAGtcttaaataattaaaagagTCTTTAACATCACTAACAGTCTTAATCAATATAGTCTTAGGATTGGTCACTTCACCTGTACTAGTCGGTTTTAGCCTGCATGCTAAGTATGTTTTACTGTTAGTATACCTTGAATGTACTGTAAGGGTCTGCAGGCTTTGAATGTACACTTGAAAGTGTTTTTATGTGGAACAACTGTCAGGTACATATCTTTGGTTATGTGATATTTGCTCTCATGGTTCTGTAAAGTGCTTTGATTGGATCCCATAttgtttattagtgtgtgtatgtatgtatgtgtgtctgtgccttgCGTGATCTCAGATAGTGTCTCTACActggggggaggagagggagaaagctGCGCTCTCATGTCAACGATAGAGAGCCCACCTGTGTGTCGCTCCTGCATGtgttaaaagtgtgtgtgtgtgtgtgtgtgtagt

Function

GO: NA

KEGG:

id description
K17751 MYH6_7; myosin heavy chain 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206194 lncRNA upstream 14462 5794124 ~ 5830663 (+) True G152179
TU206160 lncRNA upstream 73258 5725886 ~ 5771867 (+) False G152149
TU206156 lncRNA upstream 114856 5725886 ~ 5730269 (+) False G152149
TU206157 lncRNA upstream 114856 5725886 ~ 5730269 (+) True G152149
TU206168 lncRNA upstream 171525 5672446 ~ 5673600 (+) True G152154
TU206220 lncRNA downstream 1676 5873764 ~ 5874303 (+) True G152201
TU206238 lncRNA downstream 81340 5953428 ~ 5957317 (+) True chst12a
TU206387 lncRNA downstream 128041 6000129 ~ 6002642 (+) True G152336
TU206405 lncRNA downstream 145129 6017217 ~ 6017471 (+) True G152350
TU206451 lncRNA downstream 221831 6093919 ~ 6094215 (+) True G152387
XM_039825222.1 mRNA upstream 63345 5762984 ~ 5781780 (+) True fscn1a
XM_039824608.1 mRNA upstream 197935 5626207 ~ 5647190 (+) True slc29a4
XM_039824951.1 mRNA upstream 234661 5602468 ~ 5610464 (+) True cpsf4
XM_039824829.1 mRNA upstream 243151 5590464 ~ 5601974 (+) True shmt1
XM_039824830.1 mRNA upstream 243151 5590469 ~ 5601974 (+) False shmt1
XM_039825021.1 mRNA downstream 15665 5887753 ~ 5904882 (+) True mmd2a
XM_039825193.1 mRNA downstream 46778 5918866 ~ 5944181 (+) True card11
XM_039825194.1 mRNA downstream 55028 5927116 ~ 5944181 (+) False card11
XM_039825195.1 mRNA downstream 78338 5950426 ~ 5954510 (+) False chst12a
XM_039826251.1 mRNA downstream 151146 6023234 ~ 6034080 (+) True LOC120575455
TU206154 other upstream 114856 5725886 ~ 5730269 (+) False G152149
TU206143 other upstream 215853 5626227 ~ 5629272 (+) False slc29a4
TU206111 other upstream 294579 5549291 ~ 5550546 (+) False G152125
TU206083 other upstream 380822 5461965 ~ 5464303 (+) False rbx1
unassigned_transcript_718 other upstream 383365 5461689 ~ 5461760 (+) True trnaq-cug_13
TU206243 other downstream 78336 5950424 ~ 5953365 (+) False chst12a
TU206798 other downstream 1398905 7270993 ~ 7273343 (+) False dexi
TU206790 other downstream 1467905 7339993 ~ 7356838 (+) True emp2
XR_005641999.1 other downstream 2200920 8073008 ~ 8073081 (+) True LOC120575508
XR_005642011.1 other downstream 2201148 8073236 ~ 8073305 (+) True LOC120575520

Expression Profile