RNA id: XM_039824608.1


Basic Information

Item Value
RNA id XM_039824608.1
length 4101
RNA type mRNA
GC content 0.48
exon number 11
gene id slc29a4
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5626207 ~ 5647190 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTCTGCTGCTGGATGGTGCGGTACAGGAGCGCAGCGCATGCAGGACGGCACCGGGTTCTTCCCTTCTGTCTGATGGAGACAGGCTGAGGAGGGACAAGGTCCGGTCCGGCAGAGACCACCTCGAGGATCCTCGCGGGGAAGGAGTGCGTTCCCGCTGCTGGAAACGCCGTGAGGAGCAGCCACGGAACAGGGGAACGAGAGTGACGACAGTAGAGATCCTCCATCCTCTGAAGGTCTCCTGCCTCTCTTCCAGACCGTGTCTCAGAGATTGTGCTTAACATACATGCTCCCAAGAGTGTGTAGCTTGTAGAGTCAAGAGgagtgtttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacttgaaGCTCAGACATGGGCTCAGTGGGAGCAGAGCGCCGCAGGCCAACGCCACAGATTCCAGAGGAGAGGGATGTgtggagggatggaggaagagctggatggagggatggaggaagggagggctggagagaggggagagagggaagagagagcggCGTGGTGCAGAGCTACAGCTTTGACTCGTACCAgctagaggaggaggagatcagTAAAGATGCCCCCGAGCGAGGAGTGCTGGCTCTGTCCGAGCCCGGTAAGGGGGTTTCTGTtgtctatctctgtgtgtgtctgttttacttcacTGATGTGGACTACCTACACCACAAGTTTGAagggaCATCCATAGTGTTCGACATGAGCCTGACGTACATCCTGGTGGCTCTGCTGGCCGTCATCCTCAACAACGTGCTGGTAGAGAGACTCAGCATGCACACCCGAATCACTGTGGGTTACATCTTCGCTCTCGGACCGCTGGTCTTTGTCAGTGTGTTTGATGTGTGGCTGGCCAAGTTCACCACCAGGCAGGCTTATATTATCAACCTCGTGTCAGTGGGAGTGGTAGCCTTTGGATGTAcagTGCAGCAGTCTAGTTTCTATGGTTACATGGGAATGCTGCCCAAGAGGTACACACAGGGGGTGATGACCGGAGAGAgtacAGCTGGTGTGATCATCTCCCTGTCGCGGATCTTCACCAAGCTACTGATCCCCGACGAGAGGAGGAACACGCTCATCTTCTTCCTCGTCTCCATCAGCATGGAGATGCTCTGCTTCCTGCTTCACCTGCTGGTCCGCCGCTCCCAGTTTGTCCGCTACTACACCAGCCACTCCCAGGGCAAAGGCCCGGCCAGAGGCCACGACCCGCGGGACAACGGGACCGGGTACAGAGTGCACCATGATGTCATCGCAGAGGAAGGAAACGGCGGGACAGCAGCACCGATCACAACAGAGGAAggcgttgaggactttgagggtGGGACGTATGTGCGGTTCGACGCCCCGAAAGCCAAGATAAGGAGGAGCTGGCCTGGTGTCCGCGACATGATCTTGCATCGTTATGTGGTGTCCCGTGTGATCTGGGCCTACATGCTGTCTATAGCAGTGACCTACAGCATCACCCTGTGTCTGTTCCCCGGGCTGGAGTCAGAGATTCGAAACCCCACCTTAGGAGAGTGGCTCCCCATTCTCATCATGGCCACCTTCAACATGTCGGACTTTGTTGGCAAGATTCTGGCAGCGCTGCCGTACGACTGGTCCGGAGGCCGCCTGCTCTTCTTTTCCTGCCTGAGAGTGGTCTTCATCCCTCTGTTCGTCATGTGTGTGTACCCGGCCAGCGCACCCACCCTGTCCCATCCTGCCTGGCCCTGTCTCTTCTCCCTCCTTATGGGAGTCACCAACGGCTACTTCGGGTCTGTGCCGATGATCCAGGCTGCGGGCAAAGTGCCGCCCGAACAGAGGGAGCTGGCAGGGAACACCATGACGGTGTCCTATATGACAGGCTTGATGGTGGGCTCCGTCGTGGCGTACGCGGCTTACAGCTTCGCAGCTCCGCCGTGCGTCACCTATCTCACGCCTGTCAACACCACTGCGTTTTGAATGTCCACGCACTTAATTAAACAAACccatataaacacacagacatgtacacACACCTGCAGCCATTTACACGTGCGAGATCCTGGCAAGAAGAAGCAACGCTGACTGATGGACTCGAGTCCAGCAGCAGAGGCCAAGAAGTCATCTGTAATGAACCCTTTAAAGGTGATTGATTCTCTTTTGTCCAGATTAAGCTTCGATTTGGCTCACTGGATAAAGGAAGAGGAATaagatacaacaaaaaatatgataaACCATAAAAATGCAGCAGATTTCTCCACTCTCTAATTCACCAGTCACCTTCAAATGTCACGGCTCTGCTGTGATGAACTTTTCCCTGGAGGTGAAGAACGGgagctgtgtgtctgtcagagAGCCAACAGAAGCCCTTTGAGTGTCTCACAGTGAAATtattgtctgcatgtgtgtgcgaacaGACCGGCTGGCATTTGTACAGTGTATAATCAAGTGGTTTTTCACTGCAGGGAACCAACGGCTAGCAGTATTTGGGGAGACCTTGTGTCAAGGGTCACATATGTGACATTTCACGATTGTTAGTATTCGAGCAGAAACGAGGTGTCAGTGTGGGCTTTTCTGGACCAGTTGTTCCGAATGTTTCCTCATTATGATCTCTGAAAACCTCTGACTACACCattcaaaaacaacaaccagagCAACTTAAAGGGGGCCACATTTAAGTCACAGTGAAACAGAAGCCCCTGATATGACATATCTGTGAGTATAATGGAATATGTGAAATTATGACACAGATTTAAATGATTGGAAATGCAAACAATATTTTTTGCAGACTGAAATCCAGTCTCCCCAAATCCAAAATCCCATCTGATTGGATAAGTTTAAGTAAAGGggatttaatataaaaaaactcCAAAAAGATTTTTGACATGTATTTAGCATAGAATAAGTGATAACTGAAAAGTTAACACGgcaaacacaaaataagaacttggaaaatgtttttatattttatttgactGTAAATTACAGTTTTCTATTAGTGACATTCAAGATACTGTCAAAAAATCCATCCTTTTTGTAGACAACTGGACTTTATCTTGATTGGCTTCCCTCAACAAAATTGTCCTGATTGCCACTCCATCTCGTCTGTCTCCATTCAGCTGCTTTTTTGAATCTGAATTGGAaagttgtatttattttcatacaTTACTCTTATCCGCCTTATATGATCTGAAAAGAGAAACAAGTAATGCTGAACGTTTATGGAGTGATCATGATTATGGGGATTAgcagctgctgctctgtgttatttttatttacaataatGCTAAAAGAAGATGAGAGTAAGCTGATTTCTGGCTGTTCAGTGACATTGACTACACTTCTTGCACCCTCTGATGGCTGGAAAGAGAACAAAAAGTTGGTATGAATTTACCAGATGAGGTCACGTGATGATAGCTGTGTCTTGcagttgtgtttaaaaaaaaaaaaggtctgcgTCCCCTCTGTGTCCCTCTGAACGGTGTCTGTGGGTAACATCCATGTAATGATGGGGGATGTTATAGGGAGACAAATACGTGCCAAAAAAAGTCTGCCTGTTTCTCATCTGTGTTCGTAACTCAGAAAAGAGTGAATGTAATTAAAGTTGTAAATATATAGAATGAAATGCACTCAAGGCAGTGACGAGTTCTTATTTTATTCATGTAAAAGCCTATAGAAAATATCAGATTCAtattttttgtagctttttttttagTAGAATCGATCCAGAGAGCCcccgtttccttttattttttcagcCTCTCCAGCTTCTTAGCTCCTCGACGTTTCCTGTAGGATTTGGTGAATTTTTCAAGAGGTTCTCCTGGCATTGCAGAGTTCAGACTTATACATTATAAAGAAAACAGGCTGCTGTGTAGAAAGTGCACTACATTATGAAGGTGACAGCTTGAATGGAGCCTAACGTTGGCGCTGTTTGACGAAGGGTAGGTGCCATTTGGGAGCTAACCTCATTACTGTATGTATGTCCCACTGTGCTGACGGTGCCACATTGCCTGaggcctctctcctctctgagcTGCTGGGTTTAAAGGTGTTTTAAGCTATTTTTGGTCAGATGTATCATTAAAGGACATGAAAagtc

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG:

id description
K03323 SLC29A4, ENT4; solute carrier family 29 (equilibrative nucleoside transporter), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641942.1 lncRNA upstream 63817 5557625 ~ 5562390 (+) True LOC120575023
TU206110 lncRNA upstream 84632 5533856 ~ 5541575 (+) True G152125
TU206087 lncRNA upstream 157112 5466285 ~ 5469095 (+) True G152115
TU205948 lncRNA upstream 193081 5367060 ~ 5433126 (+) True G152008
TU206168 lncRNA downstream 25256 5672446 ~ 5673600 (+) True G152154
TU206156 lncRNA downstream 78696 5725886 ~ 5730269 (+) False G152149
TU206157 lncRNA downstream 78696 5725886 ~ 5730269 (+) True G152149
TU206160 lncRNA downstream 78696 5725886 ~ 5771867 (+) False G152149
TU206194 lncRNA downstream 146934 5794124 ~ 5830663 (+) True G152179
XM_039824951.1 mRNA upstream 15743 5602468 ~ 5610464 (+) True cpsf4
XM_039824829.1 mRNA upstream 24233 5590464 ~ 5601974 (+) True shmt1
XM_039824830.1 mRNA upstream 24233 5590469 ~ 5601974 (+) False shmt1
XM_039824831.1 mRNA upstream 38437 5583260 ~ 5587770 (+) True pdap1b
XM_039826122.1 mRNA upstream 47535 5568585 ~ 5578672 (+) True smcr8a
XM_039825222.1 mRNA downstream 115794 5762984 ~ 5781780 (+) True fscn1a
XM_039823945.1 mRNA downstream 197935 5845125 ~ 5872088 (+) True LOC120573990
XM_039825021.1 mRNA downstream 240563 5887753 ~ 5904882 (+) True mmd2a
XM_039825193.1 mRNA downstream 271676 5918866 ~ 5944181 (+) True card11
XM_039825194.1 mRNA downstream 279926 5927116 ~ 5944181 (+) False card11
TU206111 other upstream 75661 5549291 ~ 5550546 (+) False G152125
TU206083 other upstream 161904 5461965 ~ 5464303 (+) False rbx1
unassigned_transcript_718 other upstream 164447 5461689 ~ 5461760 (+) True trnaq-cug_13
TU205981 other upstream 248468 5370950 ~ 5377739 (+) True G152028
TU205974 other upstream 264912 5359654 ~ 5361295 (+) True G152024
TU206154 other downstream 78696 5725886 ~ 5730269 (+) False G152149
TU206243 other downstream 303234 5950424 ~ 5953365 (+) False chst12a
TU206798 other downstream 1623803 7270993 ~ 7273343 (+) False dexi
TU206790 other downstream 1692803 7339993 ~ 7356838 (+) True emp2
XR_005641999.1 other downstream 2425818 8073008 ~ 8073081 (+) True LOC120575508

Expression Profile