RNA id: XM_039825021.1


Basic Information

Item Value
RNA id XM_039825021.1
length 2543
RNA type mRNA
GC content 0.45
exon number 7
gene id mmd2a
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5887753 ~ 5904882 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCGCGGAACATCCTGCAAACAGATCTGAGACTCCGAAAAAAATCTCTGTACAGTTCCCCAACACCCATCGCCTCCGTGTTCCCACCGGGATGGCTCGATGTTTGACCACCGGAGAAGTCCCGGCACTTTAGATAAGAGTcgtgtatttgtgtgcagctGACTCTGCAGGGTCGATGCCCCTGACGGActttatgtgtttatgtttgcaCGCGCGGCGGTGGGACATCCGGAATGGGGGATCCGTAGGAGGAGACGACGCTCGCTGGTGTGCTGTTAGCAAATAGAGCGCACCAACGCgcgcgcaaaaaaaaaaaataaaagcccatACGCACGAGATGGACTTTAAGAGGACAAAATTTGGaagGTTCATGAACTGCAGGGTCCCAGCCAGTAAGAGATACCAGCCCACTGAATATGAACATGTCGCAAACTGTGCCACACATGGGGTATGGATCCTCCCCAGTCTGGTGGGCGGGTCTGTGCTCTACTTCTTGTCTGTGGACCAATGGCATAGTGTGGCTGCCTGGCTCTATGGGAGCGGTCTCACCGGCCTGTTCGTCACGTCAACGCTCTTCCACACCGCTGCCTGGAAAATCAGCCAcctccggaAGGTGGAGCAGCGCTTCCACATGTGTGACAGAATGGCCATCTACTTCTTCATAGCTGCCTCCTACTCTCCCTGGCTGATGCTGAGGGATCTGGGGCCCTGGGCGTGCCACATGCGCTGGCTCATATGGCTCATGGCTTGCGTAGGATCCGTGTACGTCTTCTTTTTCCACGAGAGGTACAAGCTGGTAGAGTTGTTTGGATATGTGGCCATGGGGGTTGTTCCGGCTTTGGTCATCCTGTCTATGGTGGAgcgtgcaggtgtgtgtgaacTGGCAGTGGGAGGTGTCTTCTATGTGGTGGGCGTGGTCTTCTTTAAGAGCGATGGCCTCGTCCCTTTCGCCCACGCCATCTGGCATCTTTTCGTGGCGGCGGGAGCATGCATTCATTATTACGCCATCTGGAGGTACCTGTACTTACCCGGGCCGCTGCTGCAGACGTCGAGGTGACTAGCCTCTTCTCGTCATTAGGCCATTTTGTTTTGACTACAACTAACCTGACTCACGAGGCTGAACCTTGAGAGACGCTGCTGAGACGATCGGATCGCACTGGCTGCTGCAGATCAGATGAAATTCTCCACAGTTGGGGCCAAAACCCCTGGGGGGGAATCTTACTGTTAATCtaaaaggcatttttttttaacatgcttaTTATATAACAGACTGATCAGTGAACATTCATAACTGACATAACCAAACGTACGCAGGAATACGACTCTCATTCTGCTGTCCAAGACATTTTTATCATCAGAAAGATAAGAAACAGCCCTGGGTATGAATCTTCATTTGTGTTCATCACCTGCTGGGAGATGTTTGTGCAAACAGGGCAACATATAATGTGCCAGCAAGCTTAGATGACCAATGTTCAGTGAAATGGAGTAGTTTGACAATTTGGTAATGCGCTTTATTCCCTTTCTTACTGGGAGTTAGATGAGGAGATTGATACCATTCTCATTTCTGTACTAAATACATAGTCAGCAACTCTCTGTAAGAATAAGCAAATAAGCGTATAAAACGTATTTCTTTAATCACACATCTTCATAAGAGAACTGACGACATACACTCTGTGACTAAACTATCCTGGGCTAATAAACTCCACCCTTTACACCTTTACATATTCCAACCGTAGGTTATGTGCCAAAACGTTCCACAGAGGCATTCCTCTATATTGGTGCTGCTAACCCCTACTCCActttattttggttttgttcatttttgcaCAGTggcaaaatatgaaaatatagaGTTGGCATTACAAACAACACATAACGGTTTCATAAACAAACGTTTTAGGTTGACTTAAACTGCATTAAGCAACCGGCAGACAGACTTAAAGTCACCATATATTGGCTGATATGAATTCACATTGACTGATGACCCTCTCTTACTCCAGATAATAAGTCGACTGTTGAGGATAGCGGGCCTCAGTAGCCCGATTGTGATTCTGTTTTGATTTACATTAGTGTTGAATCTGCCTCAAAATCAATTCTCATCCTTTTGCGTTATGTTATTTGAAAGATTAAAAGTCTAATCTAGAGCTAATGTCACACTAAGTGTATTAAATGTCGCGGCTATAAGCATTAGTTATCTTCTTTAGAGGACGATGATTGCAAGTTGTCCTGTTTAAGTGGTGCACTCTTATCCATGAGCACTTTTCTATCAGCaacaatgttgaatgaagtaGAATTTCCTAAAATCCTCAGAATACACATGGGCATGTTATACACCTTTTTTTACGTTTTAATTTTTATACTTCTTTAAGCGCTGTATGGATCACACTTGCCGGTTTCCCTCCCCCTAACCTCTAGTAGTTCAACTGTTTGTTTTACACAGCAATTACTCAGGAAGTGAGCATTTATTTAAtgatttaatgaaaaaaatcagatgatctattttgtaaaattgtattttcATTGTATTAAAGACGATAAACTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206220 lncRNA upstream 13450 5873764 ~ 5874303 (+) True G152201
TU206194 lncRNA upstream 57090 5794124 ~ 5830663 (+) True G152179
TU206160 lncRNA upstream 115886 5725886 ~ 5771867 (+) False G152149
TU206156 lncRNA upstream 157484 5725886 ~ 5730269 (+) False G152149
TU206157 lncRNA upstream 157484 5725886 ~ 5730269 (+) True G152149
TU206238 lncRNA downstream 48546 5953428 ~ 5957317 (+) True chst12a
TU206387 lncRNA downstream 95247 6000129 ~ 6002642 (+) True G152336
TU206405 lncRNA downstream 112335 6017217 ~ 6017471 (+) True G152350
TU206451 lncRNA downstream 189037 6093919 ~ 6094215 (+) True G152387
TU206483 lncRNA downstream 244383 6149265 ~ 6149583 (+) True G152415
XM_039823945.1 mRNA upstream 15665 5845125 ~ 5872088 (+) True LOC120573990
XM_039825222.1 mRNA upstream 105973 5762984 ~ 5781780 (+) True fscn1a
XM_039824608.1 mRNA upstream 240563 5626207 ~ 5647190 (+) True slc29a4
XM_039824951.1 mRNA upstream 277289 5602468 ~ 5610464 (+) True cpsf4
XM_039824829.1 mRNA upstream 285779 5590464 ~ 5601974 (+) True shmt1
XM_039825193.1 mRNA downstream 13984 5918866 ~ 5944181 (+) True card11
XM_039825194.1 mRNA downstream 22234 5927116 ~ 5944181 (+) False card11
XM_039825195.1 mRNA downstream 45544 5950426 ~ 5954510 (+) False chst12a
XM_039826251.1 mRNA downstream 118352 6023234 ~ 6034080 (+) True LOC120575455
XM_039824609.1 mRNA downstream 132376 6037258 ~ 6041651 (+) True mief1
TU206154 other upstream 157484 5725886 ~ 5730269 (+) False G152149
TU206143 other upstream 258481 5626227 ~ 5629272 (+) False slc29a4
TU206111 other upstream 337207 5549291 ~ 5550546 (+) False G152125
TU206083 other upstream 423450 5461965 ~ 5464303 (+) False rbx1
unassigned_transcript_718 other upstream 425993 5461689 ~ 5461760 (+) True trnaq-cug_13
TU206243 other downstream 45542 5950424 ~ 5953365 (+) False chst12a
TU206798 other downstream 1366111 7270993 ~ 7273343 (+) False dexi
TU206790 other downstream 1435111 7339993 ~ 7356838 (+) True emp2
XR_005641999.1 other downstream 2168126 8073008 ~ 8073081 (+) True LOC120575508
XR_005642011.1 other downstream 2168354 8073236 ~ 8073305 (+) True LOC120575520

Expression Profile