RNA id: XM_039824829.1


Basic Information

Item Value
RNA id XM_039824829.1
length 2170
RNA type mRNA
GC content 0.50
exon number 13
gene id shmt1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5590464 ~ 5601974 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGGTCAAAAGTTTGGCGGACTTTAGTCCCTTGTAGGTTCACTTGATACGTCCATGCTGTATCCATGCTGTAGCGGAGCGTTCAGCCCTGTGGTCTGATTTCAGTCCAGGTTAACCAGTGACAGCAGCGTGTCTCCGCTCGACTGTGGTGGAACATGACTTAATGAGGGACCAGCTTCTGTTCCACATCCTAGGAGCAGCAACAGAAGGAAAAACATTTGGTTTTGAGATTTCCGCTTTGCGTGACCAGAGAAACCGAGAAAGCATGTCTTTAACAAATGGCCACGCTGTGAGCAACGAGACGTGGGTCTCCCACAACAAGATGATGCTGGAGCCTCTGTCCGTCAATGACTCTGAGGTGTTCTCCatcataaaaaaagagaagcacAGGCAGACGTACGGTCTGGAGCTGATAGCATCTGAGAACTTTGCCAGCAGAGCCGTTCTTGAGGCTCTGGGTTCCTGCATGAACAACAAATACTCTGAGGGATATCCCGGCCAGAGGTACTATGGTGGTACGGAGCATGTAGATGAGCTGGAGAGACTCTGCCAGAAGAGGGCGCTGGAGGCCTATGGTCTGGACTCAGAGAAATGGGGCGTCAACGCGCAGCCATACTCGGGTTCACCCGCCAACTTTGCCGTCTACACGGCCGTTGTGGAGCCCCATGGCAGGATCATGGGGCTGGACCTTCCCGATGGAGGTCACCTGACACACGGCTTCATGactgagaagaagaaaatctCAGCAACGTCCATCTTCTTTGAGTCCATGCCGTATAAGGTGAATCCAGAGACTGGCTACATTGACTATGACAGACTGCAAGAAAACGCCCGGCTGTTCCACCCAAGACTCATCATTGCAGGAACGAGCTGCTATTCCCGCAACCTTGACTACGGCCGCCTGAAGCAGATCGCTAATGAGAATGGTGCGTATCTGATGGGAGACATGGCTCACATCAGTGGATTGGTGGCTGCTGGAGTGGTGCCCTCACCCTTTGAGCACTGTGACATTGTTACCACGACAACGCACAAGACGCTGCGTGGCTGCCGCGCTGGACTCATCTTCTACAGGAAAGGCGTGCGGAGTGTGGATGCCAAGGGGAAGGAGACTCTGTACAACTTGGAGTCTTTGATCAATCAGGCTGTGTTTCCTGGGCTGCAGGGAGGACCACACAACCACGCTATCGCAGGTGTTGCTGTGGCTCTCAAACAAGCCATGACACCGGAGTTCAAGGCCTACCAGATGCAGGTTCTTGCTAACTGCAAAGCTCTATCCAGTGGCCTTATTGACCACGGCTACAAGATTGTCACTGGCGGCTCTGACAACCATCTGATCCTGCTGGACCTGCGCAGCAAAGGGACTGATGGAGGACGAGCTGAGAAGGTTTTGGAAGCCTGTGCCATTGCTTGTAATAAGAACACCTGTCcagGAGATAAGAGTGCTCTGCGCCCTAGTGGTCTGAGGTTTGGCTCTCCAGCTCTGACCTCCAGAGGCTTGGTGGAGGATGACTTCAAGAAGGTGGCTGAGTTCATTCACAGAGGTATTGAGCTGACCTTGGAGGTGCAGGGAAGCCTGGATCCCAAGGCCAATCTAAAGGAGTTCATTCAGGCACTGGCCCAGGGAGAGAAGTTCCAGCAGCGGGTAGCAGAAATCAGGGCAGAAGTGGAGGGTTTCGCTGGCCAGTTCCCCATGCCTGGCCTACCTGAGCTGTAGAGGGTGGCAGTTTAGACACTGACAGATGCTGGACTGATGATTATAACAAACATAATACCAAATCTTTGTGGGGTGTGgtattgtgtgtatatttgtttaATCTGTCACTACACAAATCAAGACACCTCATGACTTCACAGCAGTTCAGTTTCAGCTTGGAACAGATTGGTCTTAATGGAAAGATAGATTTACAGACTTTATTGTCATCCAATTATCCAGTGTTGCTACAGTGCCTTGTTGTTTGAGATAGGGTTTTGTTTTCTGCTGTGGCTCTGGATCTCTGTTACGATCACATTTTAAGCTTTAATCTAGTCAGAAATCACCATTTCTTTTGTATTAAATGTACAATTCCAAAGTTTTGTTACAGACAGTACTGCAGATTTAAACATGAAGTGTGACTGTGACATTCATACATAAGCATCCTGTATAGAGAAGTAAAACAATTGAATGAAACCA

Function

GO:

id name namespace
GO:0006544 glycine metabolic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0035999 tetrahydrofolate interconversion biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004372 glycine hydroxymethyltransferase activity molecular_function

KEGG:

id description
K00600 glyA, SHMT; glycine hydroxymethyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641942.1 lncRNA upstream 28074 5557625 ~ 5562390 (+) True LOC120575023
TU206110 lncRNA upstream 48889 5533856 ~ 5541575 (+) True G152125
TU206087 lncRNA upstream 121369 5466285 ~ 5469095 (+) True G152115
TU205948 lncRNA upstream 157338 5367060 ~ 5433126 (+) True G152008
TU206153 lncRNA downstream 31513 5633487 ~ 5633861 (+) True G152148
TU206168 lncRNA downstream 70472 5672446 ~ 5673600 (+) True G152154
TU206156 lncRNA downstream 123912 5725886 ~ 5730269 (+) False G152149
TU206157 lncRNA downstream 123912 5725886 ~ 5730269 (+) True G152149
TU206160 lncRNA downstream 123912 5725886 ~ 5771867 (+) False G152149
XM_039824831.1 mRNA upstream 2694 5583260 ~ 5587770 (+) True pdap1b
XM_039826122.1 mRNA upstream 11792 5568585 ~ 5578672 (+) True smcr8a
XM_039824488.1 mRNA upstream 58202 5497950 ~ 5532262 (+) True ep300b
XM_039824485.1 mRNA upstream 94876 5478106 ~ 5495588 (+) False xpnpep3
XM_039824484.1 mRNA upstream 94876 5479770 ~ 5495588 (+) True xpnpep3
XM_039824951.1 mRNA downstream 494 5602468 ~ 5610464 (+) True cpsf4
XM_039824608.1 mRNA downstream 24233 5626207 ~ 5647190 (+) True slc29a4
XM_039825222.1 mRNA downstream 161010 5762984 ~ 5781780 (+) True fscn1a
XM_039823945.1 mRNA downstream 243151 5845125 ~ 5872088 (+) True LOC120573990
XM_039825021.1 mRNA downstream 285779 5887753 ~ 5904882 (+) True mmd2a
TU206111 other upstream 39918 5549291 ~ 5550546 (+) False G152125
TU206083 other upstream 126161 5461965 ~ 5464303 (+) False rbx1
unassigned_transcript_718 other upstream 128704 5461689 ~ 5461760 (+) True trnaq-cug_13
TU205981 other upstream 212725 5370950 ~ 5377739 (+) True G152028
TU205974 other upstream 229169 5359654 ~ 5361295 (+) True G152024
TU206143 other downstream 24253 5626227 ~ 5629272 (+) False slc29a4
TU206154 other downstream 123912 5725886 ~ 5730269 (+) False G152149
TU206243 other downstream 348450 5950424 ~ 5953365 (+) False chst12a
TU206798 other downstream 1669019 7270993 ~ 7273343 (+) False dexi
TU206790 other downstream 1738019 7339993 ~ 7356838 (+) True emp2

Expression Profile