RNA id: TCONS_00075286


Basic Information

Item Value
RNA id TCONS_00075286
length 1029
lncRNA type antisense_over
GC content 0.36
exon number 4
gene id XLOC_037589
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3358397 ~ 3395521 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCAAAATTAGCCTGAATTGCATGCTATAAAGAGGGAAAATAAAGCAGGATTTTTCATTCCTGCTCGGAGAGCGTCTGTCAGCTCCTCTGAGCCCAGCTAGAGGAGGCAGATTCTGGGACCCAAAGAGCCGAACCAATGCCTTGACTGCTGGATGCTCTTTTCGCATTCGTCTATTTCCCCCGGGAGTGATGCATAGAATAGCCGATGCCAATCTTTGTGTTTATCACAGATTAAGTGAtcgtttgcagctggaagggcatccgctgtgcaaaacatatgctggataagttggcagttcattctgctgtggcgaccccagattaataaaagTTCTAGCTGACGAGTCTCTACAatggaaggacatacaaactaaACGGCGTCCGATCTGGTTCTTCCAACACACCTGTAGATGAAGAAAGCATACTATATCCACAAGCCTGCTATACTCTGTGTTTTCTTGTAATATATGttattgatattatatatatGACCCTGCATAGACCAAAACCAGTCAGAAGTGTCAACTGAAATAcagtttagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagattagctgTCCATTAATATATGATTTGCAAAGATTGGGCAATATTTGGCAGACATATGACTATGTGAAAATCTGGATACTGAGGGGTTTAAGTAATCTAAATATTGGGTAAAATCGCCTTTAAAGTTGAACTAATAAAGTTACTTAATGCATATTATTAATCAGACATTAAgcttttatatttatacagtagGACATTTACAGACTTTAAGGAACATGACCTTTACCTCCATTATGATTTTGTCAATGAAGAAAGATCAATATTACACAATAAACAAATGTAACGCTGCCCTAAACATATTAGTTGAATCAGATTTATTTTTCTAGTCATC

Function

GO:

id name namespace
GO:0043269 regulation of ion transport biological_process
GO:0030182 neuron differentiation biological_process
GO:0048666 neuron development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034705 potassium channel complex cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0005874 microtubule cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0022832 voltage-gated channel activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0022843 voltage-gated cation channel activity molecular_function
GO:0015631 tubulin binding molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075284 lncRNA downstream 94184 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00073824 lncRNA downstream 220349 3153726 ~ 3154286 (-) True XLOC_037587
TCONS_00075283 lncRNA downstream 242467 3130688 ~ 3132168 (-) True XLOC_037585
TCONS_00074960 lncRNA downstream 508181 2861221 ~ 2866454 (-) True XLOC_037581
TCONS_00073816 lncRNA downstream 508228 2861221 ~ 2866407 (-) False XLOC_037581
TCONS_00073839 lncRNA upstream 536469 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075288 lncRNA upstream 1144221 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00075289 lncRNA upstream 1470846 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073852 lncRNA upstream 1647833 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075290 lncRNA upstream 1649721 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073823 mRNA downstream 224739 3135062 ~ 3149896 (-) True XLOC_037586
TCONS_00073821 mRNA downstream 340510 2949272 ~ 3034125 (-) False XLOC_037584
TCONS_00073822 mRNA downstream 340571 2949601 ~ 3034064 (-) True XLOC_037584
TCONS_00073819 mRNA downstream 429627 2896009 ~ 2945008 (-) False XLOC_037583
TCONS_00073825 mRNA upstream 2153 3397407 ~ 3400729 (-) True XLOC_037590
TCONS_00073826 mRNA upstream 95570 3490824 ~ 3496548 (-) False XLOC_037591
TCONS_00073828 mRNA upstream 103123 3498377 ~ 3519253 (-) False XLOC_037592
TCONS_00073829 mRNA upstream 103830 3499084 ~ 3519717 (-) False XLOC_037592
TCONS_00073831 mRNA upstream 226714 3621968 ~ 3653259 (-) False XLOC_037593
TCONS_00073809 other downstream 1037332 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 1097143 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073798 other downstream 1415083 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073827 other upstream 95577 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 113064 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 1048664 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 3013903 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 3322423 6717677 ~ 6717801 (-) True XLOC_037618

Expression Profile

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