RNA id: TCONS_00073983


Basic Information

Item Value
RNA id TCONS_00073983
length 1756
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_037678
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12259469 ~ 12401871 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGCGCGACAGAGGCGCCCGGAAGTGCCTCTCGCTGGTGTCATTAGAGCACGCGCAACTTCCGTCTGGTTCAAAAAAATTTTGCACTCTCCGGTATTCGGTAAAGCAGATCTAATCTTCTGTTCGTTTACTGCCTGTTAGTCATCTAGTATGGAGATACAGAGTTGTATTGAACCAATGACGCTCGGCTCTCCAACCTCTCCTAAGCCTGGGGCTCAGTTTTTACCGGGGTTTCTAATGGGAGACCTGCCTGCTCCTGTCACTCCCCAGCCCAGGTCTTTTGGTTTGACAGGTGGAGCAGAAATCAGGTCTCCTCTTCTTGCTGGTGGGTCTCCTCCACAGCCTGTAGTCCCAACACCTAAAGATAAGAGCGGAGCCCCTCCAGTCAGAAGCATCTATGATGACCTCAATGGCTCTGCTGTGGGAATGTCACCACTTGCTGCTCGCAAACAACCATTTGCTGGAGTTCACACACCATTGTCTGGTCTACAGGGTACACCAGGAACAGTTTCTAACTTTTTTAGTCCCGTGAGTCAGCAGAGGAAAACAACCCTTTCACCAGCTCAAGTAGATCCGTTCTTCACACAAGGAGATGCTCTGTCCTCTGAAGACCAGCTCGATGACACCTGGATCACAGTGTTTGGGTTCCCTCCAGCATCTGCTTCATACATCCTTTTACAGTTTGCACAATATggaaacatattaaaacatgtaATGTCTAATACGGGCAATTGGATGCATGTTCAATATCAGTCAAAACTGCAGGCGAGAAAGGCTCTCAGTAAAGATGGAAAGATATTCGGAGAAGCCATAATGATTGGCGTCAAACCATGTATCGATAAGAGTGTAATGGAGAGCTTGGACAAGGGCAGCACTTCCAGTTCTGTGTTCACACCACCGGTGAAGGCTCCATGCACCCCGAGTCACCCTCTATCAACTCCTCGATCCGTCATGAGACCCCTCAGTGCTGCTTACAAAGCATCCAGCAGTGACTACCAGGTTGTGTCAGATCAACAGACACCAAAAAAGGATGAAAGTTTTGTATCGAAAGCAATGGAGTATATGTTTGGATGGTAATCTTTCACACACAGGGTCCTGACGAAAAAGACCATCAACAGCCTCTTATATGTTGACATTGATTGCTCTAAAACAAACTCATTTTGGGGTTTTCTGGGCACAAGAATTGAGCGAATACACAAGCACTTTATCTCATCGTTTGCGGACTGATTGACTTTGTGTGCTGTTTTCCGGAAGATGGACTCGAGTGTTTTTCACATGGACTGCTTTCAGCTGCTGAGTTTGGAGTTGGTCTTTGCAATCTGTCCTTAAAATCATACAGATTTAACAACTTAATCTTGAGCGTTAAGTGTTTTAGCTCATGCCATAAAGGAGGATCTGCTGGAAATGTAAGGGTCCAAATCATGACAGACTCCCATAATGGACCCTGTTTGTACAACATCAAATTCTTGATTAACGTATTCATTGGTTACACTCTTAATTTATGGCTTTGTGTATAAAACAAGAACTCCTATGGAGGTCATTAATGATGACTTCAGCTTTCTGAGAACAAGGCCTTAAATTAGGATTTAATCATCTTCtgattaagttatatatatatatatatatctgtttttaGGTTGTTGTGGCTTTTCACTGACTTTATTAACTATTTTAATAGAACCAGAAAttcattttttaagaaatgtCTGTTTTTGAAAAATTCTTTCTCTTTAATAAACACTCTCTGACTAGaaa

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006999 nuclear pore organization biological_process
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0044613 nuclear pore central transport channel cellular_component
GO:0044615 nuclear pore nuclear basket cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-9407 Predicted to enable phospholipid binding activity and single-stranded DNA binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in NLS-bearing protein import into nucleus; nuclear pore organization; and regulation of transcription, DNA-templated. Predicted to act upstream of or within mRNA transport; nucleocytoplasmic transport; and protein transport. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore central transport channel and nuclear pore nuclear basket. Orthologous to human NUP35 (nucleoporin 35).

Ensembl:

ensembl_id ENSDART00000032344

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075304 lncRNA downstream 90917 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075303 lncRNA downstream 90920 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00075302 lncRNA downstream 90927 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00074963 lncRNA downstream 90933 12143069 ~ 12171769 (-) False XLOC_037677
TCONS_00073979 lncRNA downstream 407397 11822379 ~ 11855305 (-) False XLOC_037675
TCONS_00075305 lncRNA upstream 82172 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00074001 lncRNA upstream 319976 12589956 ~ 12594777 (-) True XLOC_037682
TCONS_00074006 lncRNA upstream 385325 12655305 ~ 12656425 (-) True XLOC_037685
TCONS_00074010 lncRNA upstream 457206 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00075306 lncRNA upstream 619918 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00073980 mRNA downstream 228258 11906770 ~ 12034444 (-) True XLOC_037676
TCONS_00073977 mRNA downstream 586211 11664797 ~ 11676491 (-) True XLOC_037674
TCONS_00073975 mRNA downstream 607671 11597500 ~ 11655031 (-) False XLOC_037673
TCONS_00073974 mRNA downstream 675632 11576502 ~ 11587070 (-) True XLOC_037672
TCONS_00073970 mRNA downstream 702270 11554405 ~ 11560432 (-) False XLOC_037670
TCONS_00073986 mRNA upstream 133309 12403289 ~ 12424231 (-) False XLOC_037679
TCONS_00073987 mRNA upstream 135141 12405121 ~ 12424794 (-) False XLOC_037679
TCONS_00073988 mRNA upstream 135666 12405646 ~ 12424791 (-) True XLOC_037679
TCONS_00073989 mRNA upstream 158246 12428226 ~ 12443726 (-) True XLOC_037680
TCONS_00073990 mRNA upstream 198520 12468500 ~ 12493628 (-) False XLOC_037681
TCONS_00073978 other downstream 407397 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 690647 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073967 other downstream 710998 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 712305 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 1416153 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073998 other upstream 312286 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 314663 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 314923 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00074018 other upstream 615772 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1569762 13839742 ~ 13853399 (-) True XLOC_037696

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000036_01782319_01786637.mRNA True 1452 mRNA 0.44 8 CI01000036 1781961 ~ 1786637 (-)