RNA id: XM_026921483.2


Basic Information

Item Value
RNA id XM_026921483.2
length 2805
RNA type mRNA
GC content 0.49
exon number 5
gene id zgc:153990
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17164803 ~ 17170161 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTTTGAAAGAAGAAACCATCAAGTAATGCATTAGGAGTGTATTTATGGAGATATGTTCAAGTCTGACATAAAAACAGACTGATAAAATCACAAAtgcagtgagtgagtggaataatgatgatgatgatgatgatgatgaagatgaagatctTTTCTTCCTGAGCTCTTGGAGCTGTAGCTACAGCAGGGCTGGCAGTGTGAGGTTAGGTGCTCAGCAGGGCCACTGCTCGCCCGTTGTGGCCGATGTGAGGAACTGCAGccgggaggaggaggaggaggagactgAGTTTGCGcggcgctgctgctgctgctgcttctgctccCGTACGAACTTTCAGCGTTTCTGGACGCAAACGCGGAAACACTCGCTGTGAAATCCGGTATTTTGGAGGAAGCTAAGGAGGAGGAGGCGAGCGTGACTCAGAAGCGAGATCAGGATGTCGACATCGGCGTCGTCTTCGCTCCACCCCGGCCAGGACGGCGCGGTGCGCTACAAGAAGCGCAAAGCCAACTTCACCTTCAGCGAAGTGCACATCCTGCTGGATGAAGTGCGCAAAAACCGCCACATCGTCGTGGgtaaGTTCAATTCAGGCATTCCCAGTGATGTGAAGAGGAGGAAGTGGACGGAGATCACGCAGCGCATTAACGAGATCGGCGAGTGCGACCGCGAAGTCGGTGAGGTCATTAAGAAGTGGTCCGACCTCAAATGCGACACCAAGCGGAAAATCGCGGCGCTGCACTCGGGCGCGGCTCTGCCCCACTCATCAGATCTCACGCAGACCGAAAACATCGTGGGCTCCATTCTGGAGCTGGACAAGAAGCCGTGGGAGGCGACGCGCTCGTCACGGGGACGCAGCAGGAGCGAGGATCAGGACGCCGCCGTAGCAGACGAGGACGATGACGTCGCCTTCATGGGGCCGGGATCAGTTCAGGATTCTCCCAGATCAGGAATCGAGACGAGGCCGATGCCACCGCCTCCTGCAGGAGCTGCCGTGGGGGGATTCGAGATGAAATTCGACCCCTCGACTACCACAGACGCAGACTCTCGCGGGATGGACTCGGATGACGATCACCCCGAAATGTTCCCCTCGTCTATGAATAACTCGTACACGGAGGACGACGGAAATCTCAGCAACGTCGCGCacgtctcctcctcctccgccaGTCACACTCAGGTGGGGGCGGAGTCAGAGAGCGCACGTGAGCAGTTAGCACAAAGCGCTAGCCTGAGCGTGCAGGAGCAGCATGTGACGAATGCGTTGCTGGGCACGGTGTCGCGCTCGCTCGAGCTCCTGGCCGAGTCGGTGCAGCAGCTGGCGGAGACGCAGCAGGAGTTTGCGCGCGAGTCGCTGCGGCTGCAGAGGGAGACGGTGCAGGTGCTGAGAGAGTTCGCCTCCGGGGCGCTGACGCTCCTGCACGAGGTCAACGGCAAACCGCCGCTCATTTAGACGACAAGGAAGTTTGAACAGTGTCACTGCCAAAAACTTTCCAACAGCATCAGGACTGTGCTCGTGCAGATCACACTAACTGTTTATCACTATATTATAAATCCAGGAGGAAACTCTGGTCAGTCTTATGTGTTACTCTTGTCTGTTGAGCAGAATTATAGGattgcctttaaaaaaacaaaacaaaatgcagtgtCCTTCTGAACGATTTTTTCCTCAGGAGCACAAACGCTAATTAGGCAGCCTCCTTCTGAACACACGGCAGCGGTCATGGTGATAATGTTGACAATGTGTGTTAAATTTCACGATTATCAGCATGGACCTAACAGGGAAGAAACGCCGCTGTCTCCATGTTCAACAACGAGCTGAGATTTTTAGAGATACAGAAACTACTCAAACATCACTTATTAACGTATACGACTCTAAAGCTGCGATTTTACGTCACTGATTCTGGTGAAAATATTCCACACGCTGTTGCCTAAGACTTTCACGAGTCGAGttttgtgtgtgacagtgttATAATCGTTCATAGCGGGAGTGCTGTTatggattttatttgtgtttttttttaaacgctttttttttttttttgtctgtgaatatgggtttaaaaaaaaaaaaaagacataccTGGACATCAGGTGTCACTTTTCTGCTGTCACTCCTATTCAAAATACGCCTTTTAAAGTGCTGAAAGCTCGACTGAGGTAACAGATGATAGCTATGGTTGCTAAGCAGTGATGGGCGGGGCTTAGAATCCGTTGTGATTGCGTGATGATAACAATAAATGTCGTTTCTGTCGCGCATTTTTCAAggaaaacagattaaaattgtTGCATTCTCACATCATTAGTTTACGATATTTTCACTGCTAAATCATGATTCCTCAGTCTGAGCTGCCATGTTTTTATACTTTGTTTTGTAACTCTCGCCTGGCGAACGGGATTATAGGCTTGGTTTCAGGCCCTCGTCCTGCCTGCCGACTTTGTGAGCTGCTTACGATGGCGGCCTTGTCCCAAACGGAGCGAGGAAAAGACCGAGGACATTCTGAAATGTCCACGATGCCAATATTGTGTGTTCATTTTCCAGCTATGATCATAAAACTGATTTTTGGCTCCTGTCTGTAACAGTGAAGACACGATTATATTCTGggaattttgttgttgttgttgttgtttatttttcatctttttttttttactgtaaaaaattgCCTCCAATGAAAAGGTGTTTAAGAGGTTTGAGGTTCTTCTgtcaaaaaaacagaacagaaacgGTATTATTCTACTGGATGCCATACATCATGTAAATTTGTCTAAGGGAAGTGGAATAAAGTCTCTGCTGCTCTTTTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460436 lncRNA downstream 175788 16978449 ~ 16989015 (-) False G388440
TU460437 lncRNA downstream 175788 16978449 ~ 16989015 (-) False G388440
TU460438 lncRNA downstream 175788 16978449 ~ 16989015 (-) True G388440
TU460396 lncRNA downstream 213752 16945913 ~ 16951051 (-) True G388406
TU460762 lncRNA upstream 32625 17202786 ~ 17202992 (-) True G388692
TU460769 lncRNA upstream 111939 17282100 ~ 17284601 (-) True G388698
TU460790 lncRNA upstream 172918 17343079 ~ 17355359 (-) True G388709
TU460855 lncRNA upstream 239842 17410003 ~ 17411908 (-) True G388754
TU460889 lncRNA upstream 382034 17552195 ~ 17552678 (-) True G388785
XM_026921740.2 mRNA downstream 10451 17144815 ~ 17154352 (-) True dlb
XM_026921810.2 mRNA downstream 21064 17134451 ~ 17143739 (-) True ppp1r14aa
XM_026921718.2 mRNA downstream 33441 17113107 ~ 17131362 (-) False exoc3l2a
XM_034300682.1 mRNA downstream 33441 17113107 ~ 17131362 (-) True exoc3l2a
XM_026921727.2 mRNA downstream 67083 17074952 ~ 17097720 (-) False mark4a
XM_026922453.2 mRNA upstream 1037 17171198 ~ 17180436 (-) True capns1a
XM_034300476.1 mRNA upstream 11030 17181191 ~ 17186675 (-) True alkbh6
XM_034300889.1 mRNA upstream 24154 17194315 ~ 17227066 (-) True nova1
XM_026921673.2 mRNA upstream 24154 17194315 ~ 17226396 (-) False nova1
XM_026921675.2 mRNA upstream 24154 17194315 ~ 17219568 (-) False nova1
LOC117596251 other downstream 106921 17055583 ~ 17057882 (-) True LOC117596251
TU460427 other downstream 194777 16966288 ~ 16970026 (-) False crx
trnam-cau_51 other downstream 729533 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 733339 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 784016 16377585 ~ 16380787 (-) False LOC113531235
TU460777 other upstream 120183 17290344 ~ 17328020 (-) True G388705
XR_004577381.1 other upstream 367274 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 498207 17668368 ~ 17727818 (-) False LOC117596207
TU461266 other upstream 1093319 18263480 ~ 18277958 (-) True G389092
TU461629 other upstream 1370169 18540330 ~ 18630565 (-) False fdx1b

Expression Profile