RNA id: XM_034300547.1


Basic Information

Item Value
RNA id XM_034300547.1
length 3343
RNA type mRNA
GC content 0.39
exon number 20
gene id LOC113531247
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15725791 ~ 15743549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAgagttaaaaatgaaaccaaagcCGGAGATATTCATAACGAAAGTGAAAGGTGAATGTGTTTTTGCGCAGTCACACTGCAGACTCTGAAGAAAACAGTCGAGGTCAGTAAATGCTCCTGAAAAGTTTGaagctttaactttttcttttttaaacagagaaacattgtggtgctgtgtgtatgtatatgcgtgtgcatatatgtgtgtcaCTTTGTCATCTTAATcttagtatttttgtttttcttcacccTTCCTCTCTACATCCGCCCTTCAGTAAACAGTGCAAAGCTGCAAAGCTGAAACAATTTGACACTGAGTagcttgccttttttttttttaaagctattttgaaacagacagacagaagcagCTGTTAAAAAGTTTTTTTCTAGTAATCAGATAACATGGACAGAAAGCCGAATCAACAGAATGGCAGTGAAGCAAATCAGCCACTCATAGAAGAGTCAAGGTCAGACACCAGCACATCAGATGAATCACAGCCGAGCACGACTtctgaaagtgaaaatgttaACCCCTCTAAGAACAAGGAGAACCATGATGgccaaaaagaacaaaaaacctCCGAAGATGACGCTGTTGGCACATCCAGTGCCTGTGCACATGAGTTGCAACAAGTAGAACCAGgGAAGATTACAGACATATTTTCAGGAAATAagttttttgttcttctctctGGAAATACATTAAGTGCCCATACGAAAATCGTGGATCATCTTAAAAACCAAAGACCAGATCTGCAGGAAGTGCAAACAGTGGATGAGTGTGATTTCGTTCTGGTTTTCTGTCCTGTTGTTTCGCGAGCTGGAACTGACATTGAAGCAGCAGTGGGAAAGCTTCAGAATGCTGCAGGTACCAAACCTGCTGTACTAGTGGTGCTCCATCACACATTTGAACCAGAGTGTGTTGTACCAGACAGCAGCAGTGCTGTGACCAGAAAGAATTCAATCACAGTAGACTGTCTGTTCCATGAAGATAAGGGATTACTGCAGTGTCATAAAAATGATGAATCACTGGCCAGAAttacaaacattataaaatcCCAGgCATCAAAAGAAAATGGTTCTTCCTGGTCAGAATACTGGCCATGGCCTCTCTGGTCAGGTTCAGCCCCAGAGGAAAAACAATGTGGAAAGGAAGAAGTGAAGGAACAAGGTCCAAAGACAAGTGAACATGAAGacaTATTTTCAGGAAATAAGTTTTTGGTCCTTCTCTTTGGAAATACATTCGATGCTCATAAGAAAATCGTGGATCATCTTAAAAACCAAAGACCAGATCTGCAGGAGGTGCAAACAGTGGATGAGTGTGATTTCATTCTGGTTTTCTGTCCTGTTGTTTCGCGAGCTGGAACTGACATTGAAGCAGCAGTGGGAAAGCTTCAGAATGCTGCAGGTACCAAACCTGCTGTACTAGTGGTGCTCCATCACACGTTTGATCCAGACTGTGTTGTACCAGACAGCAGCAGAGTTGTAACCAGAAAGAATTCAATCACAGTAGACTGTCTGTTCCATGAAGATCAGAGATTACTGCAGTGCCATAAAAATGATGAATCACTGGCCAGAAttacaaacattataaaatcCCAGGCATTGAAAGAAAATGGTTCTTCCTTGTCAGAATACGTGTGGTCATGGACTCCCTGGTCACGTTCAGCCCCAGAGgaaaaacaacaatgtgGAAAGGAAGAAGTGAAGGAACAAGGTCCAAAGACAAGTGAATATGAAGGACAGTCAACTGAAACAGGTCATAAGCTGAAAGAAagtgaggatgaagaagagTGGGAGCAAATATCCCATTCAGAGCTGTCAGAAAATCAACTCGgaAACATATCTCAAATGCTTTCAGGgaaaaagtgtttcattcttctAATTGGAAATACACTGAATTCTGAAGAGACCTTCATAGACCATTTTAAAAACCAAATACCAGGTCTTCAGGAAGTGGTTGCAGTAGATGAGTGTGATTTCATTCTAGCTTTCTGCCCTGTTGTTTCACAAGATGAAACTAACATTGAAGTAGCAGTGAAAAAGCTTCAGGAAACTTCAgaTACCAAGCCGGCTATTCTGGTGGTACTTCATCATACAACTGAGACAGAGTGTGTTGTACAAGACAGCAGAAGAGCTGTAAACAGAGAGAATACAGTCATAGTCAACTGTCTGCTCCATAAAGATCAGGGATTATTGCCACGCAATGAGGAATCGACAGGTGCTCTGTGCAAAAAGATAACCCAGATGCTTTTGGTGGCACGTAAAAACATCTggcttttaataatattttcaggtttacaaaaattattttcattaactTCATTACTAAAATCCCAGCCTGATGCAGCCAACCAGGAACAAGAACAACACGAAGAACAAGCAGTTTTACAGATAGaGAATGGAGAAGCTCGAGTTGCTGATTCTGGTGAAGAGTGGAGGGTGTAGCTGCCCACCAGAGTAAGAGCTCATGGGGAAGGTGACTGTGGTGGACACAAAATGTGGGATGCTGTAAATTTGCTGAGGACCACAGACCTTTCTCCTTGTCATACCAGTAAAACAGCCAACTGGAGAACTGAGCTTAAGAATATTCAATtctaatttctcttttttcccttttttgacTTATTCTGTAGTTATTGACCTGCAGAGATAAAATTTCTTGTCTAAACACTGTTTAAACGCTATTTATTTTTGATCTCCTAGTCAAGCATTGTTCCTCCTGCCTAATAGCATATAATCTACAAATATAGTATTAGCATATcagtatttgtaaatgtataatcACATTATTGCAACAAGTCACCATTATTACTCTTGCAGTGCATTAGcatatatatttctatacaaTATATATCTACAGTATACATATATCTATagctatctatatctatctacagtcatgtaaacaatccttctcactgtagaatggtgaattgtAAATTGTTTGGACATGACCTTATAACttttcccagattgatgagcatgGCTGATGTCTTTTCTTcctggcatgatgtagacacacacctgagtgctccagatcACCAAACTgtcaaaagttctgcttttatagaggtagtcacacttgattaactaatcttgtgtaTTTCATTTGTAACACCTGGCtactaattactctcttaatgattctgtaagtaggaagggtgtacttattttttcccacctggtttctgagttggtttactttttgggaaaaaataacTACATATTGATGTCTGGTGTgctttttgttgtcacctgaggttatttgtttatataagtTGGTGAGGACTACACAATTGTTAATTAGGTGctgacaaataaaaacatagaattgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459607 lncRNA downstream 18168 15707420 ~ 15707623 (-) True G387752
TU459419 lncRNA downstream 155030 15570555 ~ 15570761 (-) True G387601
TU459403 lncRNA downstream 244014 15481343 ~ 15481777 (-) True G387585
TU459399 lncRNA downstream 249702 15475599 ~ 15476089 (-) True G387581
TU459389 lncRNA downstream 262016 15460919 ~ 15463775 (-) True G387573
TU459674 lncRNA upstream 118691 15862239 ~ 15863547 (-) True G387806
TU459678 lncRNA upstream 134344 15877892 ~ 15881563 (-) True G387809
TU459690 lncRNA upstream 138790 15882338 ~ 15884210 (-) False gltpd2
TU459679 lncRNA upstream 170667 15914215 ~ 15940702 (-) False G387809
TU459734 lncRNA upstream 261915 16005463 ~ 16007070 (-) True G387861
XM_034300554.1 mRNA downstream 20996 15695470 ~ 15704795 (-) True LOC113531182
XM_026921806.2 mRNA downstream 33501 15686650 ~ 15692290 (-) True LOC113531228
XM_026921744.2 mRNA downstream 158380 15559319 ~ 15567411 (-) True tbx2a
XM_026922232.2 mRNA downstream 198385 15489717 ~ 15527406 (-) False acaca
XM_034300731.1 mRNA downstream 200828 15486898 ~ 15524963 (-) False acaca
XM_026921737.2 mRNA upstream 11649 15755197 ~ 15763318 (-) True LOC113531181
XM_034300704.1 mRNA upstream 20388 15763936 ~ 15773136 (-) True LOC117596246
XM_026921754.2 mRNA upstream 31027 15774575 ~ 15777858 (-) True LOC113531193
XM_034300695.1 mRNA upstream 35464 15779012 ~ 15798363 (-) False LOC113531471
XM_034300698.1 mRNA upstream 35464 15779012 ~ 15797278 (-) False LOC113531471
TU459046 other downstream 802407 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 1810294 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 1912462 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 4027247 11691234 ~ 11698544 (-) False LOC113531030
XR_004577404.1 other downstream 4098269 11621662 ~ 11627522 (-) False map1b
XR_003403223.2 other upstream 634037 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 687844 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 691650 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 1222740 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 1312035 17055583 ~ 17057882 (-) True LOC117596251

Expression Profile