RNA id: XM_034300702.1


Basic Information

Item Value
RNA id XM_034300702.1
length 3353
RNA type mRNA
GC content 0.41
exon number 20
gene id LOC113531471
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15779012 ~ 15798363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGACAAACCACCTCTGAAGCACACACAGTAAAAAGTCGTGAATTTAGCTTATCTATTAAAattctcattttaatatttacatgaaagGAAATGGCGACAGCAGGCCAGAATTGCAGTGATCAGACAGAGGcTCATGAGCATACAGCTAACCAGATGTTGAAGCATCCTCTTCTACAACACTTCACTCTAATAACTGGAAACACATTTGGATGTGATGTGGGCATAGAGATGAAACTTCAGGAACTAATACCAGGTCTGCAGAAGGTGCAGAAGGTGGAGGAGTGTGATTTCATTCTGGTTTTCTGCCCCGTTGTTCCACAAGCTGGGACTGACATTGAAGCAGCAGTGATGAAGCTTAGTACCCTACCAGGGAGCAAACCTGCTGTTCTGGTAGTGCTTCATCTCACGTTTGATCCAGAGCTTACTGTaccagacagcagcagagctgtaaagagagagaatatgatCACAGTCGACTGTCTGTTCCATGAAGATCAGGGATTACTGCAATGTTCTCGAAACAATGAAGCACTGTCCAAAGTTATAAACTGGCTTAATCCTGAGgTCATTTTGGCAAGAACACCAAGAAAAAGTCCAACTCATGAGCACGCAGCTAACCAGATGTTGAAGCATCCTCTTCTAAAACACTTCACTCTTACAAGTGGAAACACATTTGGATGGGATGTGGGCATAGAGATGAAACTTCAGGAACTAATACCAGGTCTGCAGAAGGTGCAGAAGTTGGAGGAGTGTGATTTCATTCTGGTTTTCTGCCCTGTTGTTCCACAAGCTGGGACTGACATTAAAGCAGCGGTGAAGAAGCTTAGTACCCTACCAGGTAACAAACCTGCAGTTCTGGTAGTGCTTCATCTCACATCTGATCCAGAGCTTACTGTaccagacagcagcagagctGTAAACAGAGAGAATATGATCACAGTCGACTGTCTGTTCCATGAAGATCAGGGATTACTGCCATGTTCTCGAAACAATGAAGCACTGTCCAAAGTTATAAACTGGCTTATTCCTGAGGACATTTTGGAAAGGACGCCAAGAAAAAGTCCAActCATGAGCATACAGCTAACCAGATGTTGAAGCGTCATCTTCTAAAACACTTCACTCTTACAAGTGGAAACACATTAGGGTGTGATGTGGATATAGAGAGAAAACTTCAATATCTAATACCAGGTCTGCAGAAGGTGCAGAAGGTGGAGGAGTGTGATTTCATTCTGGTTTTCTGCCCTGTTGTGTCACGAGCTGGAACTGACATCGAAGCAGCAGTGAGGAAGCTTAGTACCCTACCAGGTAACAAACCTGCAGTTCTGGTAGTGCTTCATCTCACGTTTGATCCAGAGCTTACTGTaccagacagcagcagagctgtaaagagagagaatatgatCACAGTCGACTGTCTGTTCCATGAAGATCAGGGATTACTGCCATGTTCTCGAAACAATGAAGCACTGTCCAAAGTTATAAACTGGCTTATTCCTGAGGGCATTTTGAACAAGCCACCAAGAAAACGTCCATCTCATGAGCATACATCTAACCAGATGTTGAAGCATCATCTTCTAAAACACTTCACTCTTACAAGTGGAAACACATTAGGATGTGATGTGGATATAGAGAGAAAACTTCAAAATCTAATACCAGGTCTGCAGAAGGTGCAGAAGGTGGAGGAGTGTGATTTCATTCTGGTTTTCTGCCCTGTTGTGTCACGAGCTGGAACTGACATCGAAGCAGCAGTGAGGAAGCTTAGTATCCTACCAGGTAACAAACCTGCAGTTCTGGTAGTGCTTCATCTCACATCTGATCCAGAGCTTATTGTaccagacagcagcagagctGTAAACAGAGAGAATATGATCACAGTCGACTGTCTGTTCCATGAAGATCAGGGATTACTGCCATGTTCTCGAAACAATGAAGCACTGTCCAAAGTTATAAACTGGCTTATTCCTGAGGACATTTTGGAAAGGACGCCAAGAAAAAGTCCAActCATGAGCATACAGCTAACCAGATGTTGAAGCATCATCTTCTAAAACACTTCACTCTTACAAGTGGAAACACATTAGGATGTGATGTGGATATAGAGAGAAAACTTCAAAATCTAATACCAGGTCTGCAGAAGGTGCAGAAGGTGGAGGAGTGTGATTTCATTCTGGTTTTCTGCCCTGTTGTGTCACGAGCTGGAACTGACATCGAAGCAGCAGTGAGGAAGCTTAGTACCCTACCAGGTAACAAACCTGCAGTTCTGGTAGTGCTTCATCTCACGTTTGATCCAGAGCTTACTGTaccagacagcagcagagctGTAAACAGAGAGAATATGATCACAGTCGACTGTCTGTTCCATGAAGATCAGGGATTACTGCAGTGCAGGAAGAATAATGAGGTCTTTACTCTAGTTTCACAATGGATTGAAACTCAGATATTACCAAAGACAAAGAAAGGGATTATGTCAAATgttgATGAAAATCCCAAAAAGAATGACCAAACTAACAAATTcggttttaattcatttaaactaAGTTCTAATCACCTGGGATTCAGGAGCATTATACCAAAAGCGTGGTCTCCAGTGGGCTGGATCGGTTCAAAGAACTTGACAaaaaaagaaaacatgaatgaTGAAACCAGAGAAGACCACATCCTGCCTGGACCATCTGCCAGACCCTGAAGGATCTCTGATTCTTCTCAAGATCTTTTTTTTGGAGTAGCACTGACCAACCCACTATTACACACATAGTTTTAATGAATCACCAGTacaataagaaaatataaacataaaatgtaacttttaacTGCCTGCATTCTGACTAATGTTCTTATTACTGCTGAGTATTAGGACTTTCTCCATGCCTAGTGTTTATTTGTGGTTCTCGCTATTCTTCCTACAACTATCTTGCATCCTGTTTTTGATAAGTGGACACTGTAATGGACTTTATGATAAATTCAATGGATAAATGAAATAAGGATTAATTATAATAagcagtatattattattatttaataaaatcatatgtattatgtaataataaatatgtaaggaataaatcactatGGGGGCATGTTGCTATATTAATGACAGGTTGTATGTTGCAGCATGACGGGAAGTGGAGTTACGGTTatcactccaaagttgattatttacctataacagcacatctggaagtgttttctttctcctataccacagcaactggCCATCACTGACcattttttattagttaaataCTGACACATCATAATTTGTATCCACTtatagtgtgaaaaaaaacaacaacattaaatcttcatgttatcacttatattgaAGCAGttctataacagctataaaaagtcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459607 lncRNA downstream 71389 15707420 ~ 15707623 (-) True G387752
TU459419 lncRNA downstream 208251 15570555 ~ 15570761 (-) True G387601
TU459403 lncRNA downstream 297235 15481343 ~ 15481777 (-) True G387585
TU459399 lncRNA downstream 302923 15475599 ~ 15476089 (-) True G387581
TU459389 lncRNA downstream 315237 15460919 ~ 15463775 (-) True G387573
TU459674 lncRNA upstream 64961 15862239 ~ 15863547 (-) True G387806
TU459678 lncRNA upstream 80614 15877892 ~ 15881563 (-) True G387809
TU459690 lncRNA upstream 85060 15882338 ~ 15884210 (-) False gltpd2
TU459679 lncRNA upstream 116937 15914215 ~ 15940702 (-) False G387809
TU459734 lncRNA upstream 208185 16005463 ~ 16007070 (-) True G387861
XM_026921754.2 mRNA downstream 1154 15774575 ~ 15777858 (-) True LOC113531193
XM_034300704.1 mRNA downstream 5876 15763936 ~ 15773136 (-) True LOC117596246
XM_026921737.2 mRNA downstream 15694 15755197 ~ 15763318 (-) True LOC113531181
XM_034300550.1 mRNA downstream 35499 15725791 ~ 15743513 (-) False LOC113531247
XM_026921771.2 mRNA upstream 5742 15803020 ~ 15813530 (-) True mogat3b
XM_034300707.1 mRNA upstream 5742 15803020 ~ 15807764 (-) False mogat3b
XM_034300706.1 mRNA upstream 5742 15803020 ~ 15807764 (-) False mogat3b
XM_034300705.1 mRNA upstream 5742 15803020 ~ 15807373 (-) False mogat3b
XM_026921784.2 mRNA upstream 85443 15882721 ~ 15888059 (-) True gltpd2
TU459046 other downstream 855628 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 1863515 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 1965683 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 4080468 11691234 ~ 11698544 (-) False LOC113531030
XR_004577404.1 other downstream 4151490 11621662 ~ 11627522 (-) False map1b
XR_003403223.2 other upstream 580307 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 634114 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 637920 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 1169010 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 1258305 17055583 ~ 17057882 (-) True LOC117596251

Expression Profile