RNA id: TCONS_00000753


Basic Information

Item Value
RNA id TCONS_00000753
length 2703
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_000433
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 37195465 ~ 37310490 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTCTTGCGTTTCACTGATGTCgttaaatttaaaaatgcatgctGTTAGTTGAAAGTGCAAAAACGGAAGAAAGACACGACCGACAGCTGCTGAAATAGCACAAAAACAAGCGTATTTATTAAAGAACCAGCGCTATCACTTAAGGAAATAGACATGTCCAGCAGAAACATCGAGTGGGAGCACTTCGAGGAGCGCGAGAAGGGTCACCGGTCCCCGCGGGGCAGCGGCGGCTCCCATTCCGGCTCTCGGGGAAACGGGATCGTGCCGAGTCCCGCTCACAGCGCGCACTGTAGCTTTTACCGCACGCGCACACTGCAGTCGCTCACCTCGGAGAAGAAAGCGAAAAAAGTTCGCTTTTATCGGAATGGCGACAAGTATTTCAAGGGGCTTGTGTACGCCGTGTCCGGTGACCGCTTCAGGTCTTTCGACGCGCTGCTGATGGAGCTCACGCGCTCCCTCTCGGACAATGTCAATTTACCGCAGGGAGTCCGGAGCATCTACACTGCAGATGGAGGAAAGAAGATCACCAGTCTGGATGACTTGGTAGAAGGAGAAAGCTACGTATGTGCTTCCAACGAACCTTTTCGTAAAGTGGACTACACCAAGAATGTTAATCCCAACTGGTCAGTCAATGTGAAAACTGGTGCGTCCCGCTCCATGCCATCACTTACCGCCACTAAAAATGAGCTGAGAGAACGAGAGAGCAAAGACTATATTAAGCCCAAGCTGGTGACAGTCATCAGGAGTGGTGTTAAACCGCGTAAGGCTGTTCGAATTCTCCTGAACAAGAAAACGGCTCACTCTTTTGAGCAGGTGCTCACAGACATCACTGACGCCATTAAACTGGACTCCGGGGCCGTGAAGAGACTCTACACTCTGGAAGGCAAACAAATTATATGTTTGCAGGATTTCTTTGGAGATGATGACGTTTTCATCGCGTGCGGCCCTGAGAAGTACCGTTATGCACAGGATGATTTTGTGTTGGATCACAGTGGTAAGGCTTCCACAGCCTTTATAACCGAATGTCAGGTGATCAAGTCCTCTTATTCTGCTCGCTCTGCTCCCCCTGTGAGATACTCTGGAAGTAAAAGTCCAGGAACTGGCCGTCGCAGTAAATCCCCTGGATCTGTAAACGGTGCACCCAACAGCCAAATCACTACCCCCAAATCCGCCAAATCCTCCAGCTCGTCCCCGACCAGCCCCCGCAGTATGCGCAACTTCAAGTTTAGTTGCAACAAGCGGATGGGAGTCCCTGTCCGTCTCTCTGTACAGATTCCGACACATCACTCCTCCGCAGGCAATGTGAACGGCTCCTCTGAGACGCCTCAGCATCATAACAACAGCTTGAGCCCTGAAGttaacggAAACAGGAACCTTGCTGCTTCCACTATTTTGGACAAGTACAAAATTGGCAAAGTTATCGGTGATGGAAACTTTGCTGTGGTGAAGGAATGTGTTGAACGATCCACTGGAAAGGAGTTTGCACTGAAGATCATCGATAAAAACAAATGCAGAGGCaaaGAGCACCTGATTGAGAATGAGGTGGCAGTGCTGAGGCGAGTTAAACATCCTAACATCATCATGCTGATTGAGGAGGTGGATACGCCTGCTGAGCTCTATCTGGTCATGGAACTTGTGAAGGGTGGAGATCTGTTTGATGCAATCACCTCCTCAACCAAATACACTGAAAAAGATGCCAGCGTGATGGTGTTTGACCTGGCAGCAGCTCTCAAATATCTACACAGAATGTGCATCGTTCATCGAGACATCAAACCTGAAAATTTACTGGTGTGTGAGTACCCTAATGGTACAAAGTCTTTGAAGTTGGGGGATTTTGGCTTGGCGACAGTGGTTGAAGGGCCGCTGTACACTGTTTGTGGAACACCGACTTATGTTGCCCCGGAAATCATAGCTGAGTCAGGCTACGGGCTGAAAGTGGACATCTGGGCAGCTGGAGTGATTACTTACATCCTACTGTGTGGCTTCCCACCTTTCCGCAGtgaGAATAATCTACAGGAGGACCTATTTGATCAGATCCTGCTGGGGCATTTAGAGTTCCCCTCACCATTCTGGGACAATATCTCTGATTCTGCTAAAGAGTTGATTGGtcacatgctgcaggtgaatgtGGAGGCCAGATACACAGCGGAAGATGTGCTCTCTCACCCCTGGGTCACAGAGGATGCAGCAATGGAAAACAACATGAAGATGGAGGTGGCAGGTAAACTCAAAAAGCACTTTAACTCTGTGCAGAAACAGAGCAACACTTCTGCTGGAGTTTCGGTTATCATgCTCCAAGGCAATGAACACAGCTCTAGATAAGGAAACTATCCAGCTGTCCCACCGCCGCCAGGACCGCAACCCTCCTCGTCCAGAAAAGAGACCCTCCTCCACCAACCCAGAAAGACGACGTTCCAACAGGGGACGCTCATCTGTCCAGTCGGAGGACTCTAGAAGTGCTGCTCCCATTGAGCCTGCAACCTCAGCAAACCCCAGTGCACCAGCAGCACTCCCTTCTGACCCTTCTCCGCAATTCCATGAATGCAATACTGAGTCTGAGGCCAGTAAAGACCTCCTGAAGGAAGAATAACTCTATCTTTAAGGAAACAATGGAGACAATTCCACATATACATGCTTAAGTAAATAAGTACATAAACTCTTGAGTACAAATCATTCTAGCTATAGGTTGGAATACACTGCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006972 hyperosmotic response biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-170 Enables protein serine/threonine kinase activity. Acts upstream of or within hyperosmotic response and protein autophosphorylation. Located in microtubule cytoskeleton; nucleus; and synaptic vesicle. Is expressed in several structures, including hindbrain neural plate; immature eye; nervous system; optic primordium; and trigeminal placode. Orthologous to human DCLK2 (doublecortin like kinase 2).

Ensembl:

ensembl_id ENSDART00000045111

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002856 lncRNA upstream 229824 36966000 ~ 36966282 (+) True XLOC_000431
TCONS_00002855 lncRNA upstream 538291 36651080 ~ 36657815 (+) False XLOC_000428
TCONS_00000727 lncRNA upstream 1201897 35993297 ~ 35994209 (+) True XLOC_000424
TCONS_00000721 lncRNA upstream 1233044 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000764 lncRNA downstream 100334 37404990 ~ 37417631 (+) True XLOC_000435
TCONS_00002857 lncRNA downstream 286602 37591258 ~ 37638367 (+) True XLOC_000436
TCONS_00003090 lncRNA downstream 528691 37833347 ~ 37834392 (+) True XLOC_000439
TCONS_00000772 lncRNA downstream 841752 38146408 ~ 38154559 (+) False XLOC_000441
TCONS_00003091 lncRNA downstream 867201 38171857 ~ 38278251 (+) False XLOC_000442
TCONS_00000742 mRNA upstream 283015 36772348 ~ 36913091 (+) False XLOC_000430
TCONS_00000743 mRNA upstream 283487 36911471 ~ 36912619 (+) True XLOC_000430
TCONS_00000741 mRNA upstream 365931 36771954 ~ 36830175 (+) False XLOC_000430
TCONS_00000739 mRNA upstream 453738 36722122 ~ 36742368 (+) False XLOC_000429
TCONS_00000737 mRNA upstream 493751 36665602 ~ 36702355 (+) False XLOC_000428
TCONS_00000759 mRNA downstream 7924 37312580 ~ 37362246 (+) False XLOC_000434
TCONS_00000760 mRNA downstream 50831 37355487 ~ 37362113 (+) True XLOC_000434
TCONS_00000761 mRNA downstream 86485 37391141 ~ 37418194 (+) False XLOC_000435
TCONS_00000762 mRNA downstream 86539 37391195 ~ 37400053 (+) False XLOC_000435
TCONS_00000763 mRNA downstream 87060 37391716 ~ 37419873 (+) False XLOC_000435
TCONS_00000744 other upstream 72334 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000740 other upstream 449537 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000735 other upstream 505207 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000728 other upstream 1041729 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000717 other upstream 1393022 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000769 other downstream 691803 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000777 other downstream 1057692 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000779 other downstream 1361098 38665754 ~ 38753029 (+) True XLOC_000446
TCONS_00000785 other downstream 1513656 38818312 ~ 38822163 (+) False XLOC_000448
TCONS_00000786 other downstream 1514921 38819577 ~ 38822163 (+) True XLOC_000448

Expression Profile

//