RNA id: AMCG00020551


Basic Information

Item Value
RNA id AMCG00020551
length 1395
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00020551
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24639798 ~ 24641669 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGAGGCATGGCAACAGCATGCTGTAGCCCCTCCCCCCGTCGTTCACACCATCCCACCCGGAGCAGAGAGTGCGCTGGGCTGTGCGGTCTATGGTATCGTCCTGCAGCCGGACCCTGccttgcagcagcagcagcagcaacagcatcaccaacagcagcagcagcagcagcagcagcaacagcagcagcagcagcagcagcagcagcacgcGGCCCAGGCACAGCAGCCCTCCATGCAAGTTGGAGAAGGAGGACACAAGTGTGGGGCCTGTGGCCATGATATCTCGCACCTGGCCAACCCTCACGAGCATCAGTGCATGGTGAGTCAGGATCGCTCTTTCCAGTGCACGCAGTGCCTAAAAATCTTCCACCAGGCCACCGACCTCCTGGAACACCAGTGTGTCCAGGTAGAACAGAAACCCTTTGTTTGTGGGGTGTGTAAGATGGGTTTCTCACTTCTCACATCTCTAGCTCAGCACCATAATGCTCATAGCAGCAGCAATCCCATGAAGTGCTCTATATGTGAGAAGACCTATCGACCCAACTCTGCAGGGGCAGGAAATGCCACCCCTACGCCTTCTGCTGCCAATCCCCAACAGCCCTCTGCAGAAGCCGCAGACAGAGCAGGGGCTGTAGTTGGGGCTTCAGCCAGCGGAGGAGCCGGGGGGGTTGTGTGCGAAGAGTGCCAGATGAGCTTCAAACAGCAGTACGCCCTGGTTCGCCATCGCCGCACCCATAAAACCCATGACCGTCCCTTCAAATGCAATCTGTGTGACAAAGGCTTCCTGCAGCCCTCCCATTTGCTCTACCACCAGCACGTCCATGGGATTGAGAGTCTCTTTAAGTGTGCCTCCTGCCAGAAGGGTTTCAGCCAGTCCGGGGATCTCCTGCGACACAAGTGCGGCGGCGCAGCATCAGCGATGACCGCTGCCGATCGGCCCTACAAGTGTGACGTCTGTGGGAAGGCCTACAAAAAATCATCCACCCTCCAGCGGCACCAAAACTCCCACTGTGCCGAGAAGCCCCTCAAGTGCACGCTCTGCGACCGGCGCTTCCTGTCATCCTCAGAGTTCGTGCAGCACAGGTGTGACCCGGCCCGCGAGAAGCCCTTGAAATGCCCGGATTGCGAGAAGCGGTTCAAGTACTCATCTGACCTTCAGCGCCATCGCCGAGTGCACACAGGAGAGAAGCCCTTCAAATGCCCCAGCTGTGACAAAGGCTTCAAGCAAAGGGAGCACCTGGCCAAACACCAGAGCGTGCATGCCCGGGAGGCCCAATTTAAGTGCGTCTGGTGCGGAGAGCGGTTTGGGGACCTTGGGGCGCTGCAGGAGCACACAGTTCAGCACACAGCTGAGGGAGGTGGATACCCTGTGCCGCCTTGTATACAGTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80159 lncRNA upstream 42011 24594130 ~ 24597787 (+) True G64069
TU80134 lncRNA upstream 74306 24520836 ~ 24565492 (+) False G64048
TU80136 lncRNA upstream 99091 24488904 ~ 24540707 (+) False G64048
TU80133 lncRNA upstream 114223 24520836 ~ 24525575 (+) True G64048
TU80086 lncRNA upstream 397121 24232739 ~ 24242677 (+) True G64009
TU80221 lncRNA downstream 50328 24691997 ~ 24695554 (+) True G64121
TU80222 lncRNA downstream 54933 24696602 ~ 24696809 (+) True G64122
TU80261 lncRNA downstream 168295 24809964 ~ 24811811 (+) True G64158
TU80291 lncRNA downstream 303592 24945261 ~ 24946210 (+) True G64185
TU80321 lncRNA downstream 416500 25058169 ~ 25060329 (+) True G64210
AMCG00020553 mRNA upstream 9094 24622544 ~ 24630704 (+) True AMCG00020553
AMCG00020552 mRNA upstream 19931 24613873 ~ 24619867 (+) True AMCG00020552
AMCG00020543 mRNA upstream 186198 24447276 ~ 24453600 (+) True AMCG00020543
AMCG00020537 mRNA upstream 295863 24330886 ~ 24343935 (+) True AMCG00020537
AMCG00020531 mRNA upstream 331638 24304634 ~ 24308160 (+) True AMCG00020531
AMCG00020556 mRNA downstream 35020 24676689 ~ 24688415 (+) True AMCG00020556
AMCG00020562 mRNA downstream 64766 24706435 ~ 24707136 (+) True AMCG00020562
AMCG00020558 mRNA downstream 94305 24735974 ~ 24737900 (+) True AMCG00020558
AMCG00020557 mRNA downstream 105754 24747423 ~ 24756285 (+) True AMCG00020557
AMCG00020563 mRNA downstream 159648 24801317 ~ 24809266 (+) True AMCG00020563
TU80130 other upstream 157684 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 584206 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 585921 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 1564853 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 2267038 22358828 ~ 22372760 (+) False AMCG00020487
TU80333 other downstream 432388 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 436473 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 909242 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 2774327 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 4231961 28873630 ~ 28874072 (+) True G64887

Expression Profile