Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU445221 |
| length | 711 |
| lncRNA type | inter_gene |
| GC content | 0.53 |
| exon number | 2 |
| gene id | G375970 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 14518989 ~ 14522534 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU445203 | lncRNA | upstream | 37470 | 14481221 ~ 14481519 (+) | True | G375955 |
| TU445172 | lncRNA | upstream | 157949 | 14360720 ~ 14361040 (+) | True | G375931 |
| TU445171 | lncRNA | upstream | 158477 | 14360289 ~ 14360512 (+) | False | LOC113537358 |
| XR_004577353.1 | lncRNA | upstream | 190288 | 14327369 ~ 14328701 (+) | True | LOC117596176 |
| XR_004577348.1 | lncRNA | upstream | 251378 | 14247687 ~ 14267611 (+) | True | LOC113537225 |
| TU445225 | lncRNA | downstream | 31303 | 14553837 ~ 14599354 (+) | False | G375973 |
| TU445229 | lncRNA | downstream | 31303 | 14553837 ~ 14630233 (+) | False | G375973 |
| TU445233 | lncRNA | downstream | 31303 | 14553837 ~ 14599354 (+) | False | G375973 |
| TU445235 | lncRNA | downstream | 31303 | 14553837 ~ 14558881 (+) | True | G375973 |
| TU445236 | lncRNA | downstream | 31303 | 14553837 ~ 14630233 (+) | False | G375973 |
| XM_026931770.2 | mRNA | upstream | 53261 | 14442504 ~ 14465728 (+) | True | ppp3r1b |
| XM_026931708.2 | mRNA | upstream | 77695 | 14435948 ~ 14441294 (+) | True | cnrip1a |
| XM_034300248.1 | mRNA | upstream | 84983 | 14430947 ~ 14434006 (+) | False | LOC113537569 |
| XM_034300292.1 | mRNA | downstream | 10476 | 14533010 ~ 14548552 (+) | True | spred2a |
| XM_026931766.2 | mRNA | downstream | 130713 | 14653247 ~ 14658894 (+) | True | taf5l |
| XM_026932162.2 | mRNA | downstream | 142128 | 14664662 ~ 14681386 (+) | True | capn9 |
| XM_026931637.2 | mRNA | downstream | 159850 | 14682384 ~ 14694809 (+) | True | ltv1 |
| XM_026931638.2 | mRNA | downstream | 159850 | 14682384 ~ 14694809 (+) | False | ltv1 |
| TU444908 | other | upstream | 476375 | 14023250 ~ 14042614 (+) | False | G375711 |
| XR_004577362.1 | other | upstream | 497858 | 14016523 ~ 14021131 (+) | False | gpalpp1 |
| TU442901 | other | upstream | 3509369 | 11006008 ~ 11009620 (+) | True | G373955 |
| TU442162 | other | upstream | 4642436 | 9839096 ~ 9876553 (+) | True | LOC117596102 |
| TU441073 | other | upstream | 6365134 | 8149960 ~ 8153855 (+) | True | G372351 |
| TU445701 | other | downstream | 557206 | 15079740 ~ 15091481 (+) | False | rfx1b |
| TU445724 | other | downstream | 591938 | 15114472 ~ 15116856 (+) | False | smdt1b |
| trnaq-cug_18 | other | downstream | 826720 | 15349254 ~ 15349325 (+) | True | trnaq-cug_18 |
| TU445810 | other | downstream | 898865 | 15421399 ~ 15424798 (+) | True | G376467 |
| TU445848 | other | downstream | 968512 | 15491046 ~ 15492518 (+) | False | G376488 |
