RNA id: TU445236


Basic Information

Item Value
RNA id TU445236
length 2639
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G375973
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14553837 ~ 14630233 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCAGTAcgctacaaaacaaaaataaaaacaaaacacagaaatcaaacaaaacccccccccaaaaaaaataaaagttaaaaaaaagtcaccacacTTGGCACTGTGTTACTGCTCGGGGATAACAAAAAAATCCTGCGatatatttattcacttattctGTGCGTGAGGAAGCCTTTAGCTTTCATAACCACTCACGCTGCTGTTATTAATCATGATTAAAATTATTCCTGACAATAATAAATCATCAATAATATTAGCATTACTCATAATTACAATGCCAGTCATATTAGCAACAACCATCCTCGCATTTAAAGGGCCAGTACGCAGAAACAATGCTAATGGGGATCGCTAGTCAGCAAATGTTGATTCAAAATGTggtttatgtttcttttttttaaatacttttaaattctttattttttatgctaGTAACTATTGAGCGCTACGCTACAATGCCTGTTAGCGTACGAATAAAATGAAGCGTGTTCTGTGTAACTGCCAGTAGATTTACTATGTAATactgttaccatagcaacacgTGCAGCTCAAAATGGCAGCCAGGCTTTCAAGCCCGAGGTAAAAAGCTATCACTaatcttaaaaagaaaaaaaaaaatatccttcATAATTTTTAGAAACATGATTTCTGTCTGTTGTTACATAAACAAAGTGTTAATGGTCAtgaattttgtttatatttatgtttttttttttcaccttttagCTCCTCAGCAGCTTCCTTAATGTCATtctaagctagctagccaacTGCCAACACTAGCTACCTATTAGCCGTTTAAATGTGAGGATAGCTGTTGCTAATATAACCGCAAATACCACATAGCAACATTAGCAACATGGCTAGCCTTATTAGCATTGTTTTGATAAATTAGCCctgtaagcttttttttttttttttttttttttttaagtttcatcTAGACCGCACAAAACCTGCTTGTGTATGCGAGCTGCGCTAACCCAACAAACCGTGTACGAGAAAATGAACCGTATCAAAATAGAAAGCGCATAccaaaaagaaaggaaaagaaaacaacataaaaattcCAGCctacattaaaaacatgtgaCGGTGATCAGCAGACAGATTTGAGCTGATAAACAATGGTGGACTCGATGGCGAAGTGGCTGCTAAAGGGACAGTTTGATAAAAAGCAATGCTAATTCTCCAGGCGATGAACGAAGGTTAGCTGTGTTAGTAACACTAGCATTCACCCCTCGTTAGCCTGATTAGCATATCTGAACTTAAGAGGGAATGTTCCGAGGGCAGCGCTGCTGCTGACATTTCATTCAAACGCTGTGCTGATCTGGAAACAGTTTCATTCACGATATCGTCAACACGCGTAACATTAACGTTAAAGATGGTTCCTGTTAAAGGCTGCGTCGTAAAAATCACACCGATCCAGAATTTTCTCCAAGCTAACTTCTGAAAGGTCCTGTACCAGATCTAACACTAAGTGGGAATGATGGTAATTTGGTCCTGATGGATGAAACACaatcctaatttttttttctacgcTACACTCTAAACTACACGGCTAATAAACTTGAATGAATTTGTTCACCTTAGCGCCCTCTAGTGGACCAGAGCATTTTCGTAGAACAGTGTGTGCACATCCGACAACATatcaaacaataaaaacataaaaaggaaattaaaaagaaaaatagaaaggatagtaacacattttacattttaaaaaagcagctCATCTCAGCTGGGTGCCTTTACACATTTGATCCTGTTGgctttaaaggagcagtttgtaatttttagaaaaaaaaaaaaccaaaaaccacAACCCCTGTATTCAAATTGTATTTGCCTTTGAGTTGCCTTTTATGGCAACGTGGCAGTTGTGAACCAGCATTGCCTGGGAGAtcatttcagggccagaaaaaatgtaaacagaaacctgaaataaaaaaataaaaaaaatagccaaaatCTGTTGTATACCAATACCGTGACTCAAAGTTTTTCTGAGTTATCTTTAAATTTGCATGATTGCTGCAGGTCTAGGAACTCTTTGaaaaattacagactgcacctttaaacatcTTACAGTTCATACAGTTCATTGTTCTTGTTGTCTGGATCTCCTggcgattcatttatttatttaatcaagtTTATTTTACACGTTTTTAACCATTTGTGTGAGCTGTACGTCCTTCAAAAATGACAAGTGGCGACAAAATGTGAAagacatgaagagagagagagagagagagaagctccATCCTAGGATTAATTTTGGCAGCATAAACAAGTACTTTAATGAGTGAGGATTTTACTTAaccgtttttttcccccttatcaGAGCTTTAAAGTCCACATCGTGGTCAGAAGGTTGCACCAATAAGACGATGATATTTTTATGCTGCAACTGTAAAATTcaagtatcattattattattattattattatcattattataataatcagGTAGAACTGCTTATTTTCCCCATTTATACACTGCCAAAATGCCACCctgtatgaatgtgtgaattaattcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtcagcttgCATGTCATGCATGCACTTTCATGAAGAGATGCTTTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445221 lncRNA upstream 31303 14518989 ~ 14522534 (+) True G375970
TU445203 lncRNA upstream 72318 14481221 ~ 14481519 (+) True G375955
TU445172 lncRNA upstream 192797 14360720 ~ 14361040 (+) True G375931
TU445171 lncRNA upstream 193325 14360289 ~ 14360512 (+) False LOC113537358
XR_004577353.1 lncRNA upstream 225136 14327369 ~ 14328701 (+) True LOC117596176
TU445495 lncRNA downstream 159813 14790046 ~ 14790471 (+) True G376191
TU445508 lncRNA downstream 175485 14805718 ~ 14866892 (+) True G376202
TU445558 lncRNA downstream 242990 14873223 ~ 14873501 (+) True G376245
TU445552 lncRNA downstream 280492 14910725 ~ 14916443 (+) True G376242
TU445589 lncRNA downstream 347540 14977773 ~ 14977978 (+) True G376273
XM_034300292.1 mRNA upstream 5285 14533010 ~ 14548552 (+) True spred2a
XM_026931770.2 mRNA upstream 88109 14442504 ~ 14465728 (+) True ppp3r1b
XM_026931708.2 mRNA upstream 112543 14435948 ~ 14441294 (+) True cnrip1a
XM_034300249.1 mRNA upstream 119831 14431059 ~ 14434006 (+) False LOC113537569
XM_026932114.2 mRNA upstream 119833 14430960 ~ 14434004 (+) True LOC113537569
XM_026931766.2 mRNA downstream 23014 14653247 ~ 14658894 (+) True taf5l
XM_026932162.2 mRNA downstream 34429 14664662 ~ 14681386 (+) True capn9
XM_026931637.2 mRNA downstream 52151 14682384 ~ 14694809 (+) True ltv1
XM_026931638.2 mRNA downstream 52151 14682384 ~ 14694809 (+) False ltv1
XM_026932337.2 mRNA downstream 86491 14716724 ~ 14719276 (+) True LOC113537710
TU444908 other upstream 511223 14023250 ~ 14042614 (+) False G375711
XR_004577362.1 other upstream 532706 14016523 ~ 14021131 (+) False gpalpp1
TU442901 other upstream 3544217 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 4677284 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 6399982 8149960 ~ 8153855 (+) True G372351
TU445701 other downstream 449507 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 484239 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 719021 15349254 ~ 15349325 (+) True trnaq-cug_18
TU445810 other downstream 791166 15421399 ~ 15424798 (+) True G376467
TU445848 other downstream 860813 15491046 ~ 15492518 (+) False G376488

Expression Profile