RNA id: XM_026932162.2


Basic Information

Item Value
RNA id XM_026932162.2
length 2637
RNA type mRNA
GC content 0.50
exon number 20
gene id capn9
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14664662 ~ 14681386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacagctgggtgTCAGTCAACTCAGGCACGGTGAGCTTGTGTCAGTCGATTACTGCATTGTCAGGCCCTTGTTTCGTCTTCTCTTTGCTCCAGTGTGCGTGTATCCTGCAGCAGGTGTGAGGATGCCTTCTGCTTCCACTCTGTTCAGCACCTCAGGAACCAAGATCCAAGCTGAGAGCACACAGGCTGATGGAAAGACCTACGAGCAGCTGAGGCAGGAGTGCCTGCAGAGGAAGCAGCTGTTTGAGGATCCTGATTTCCCTGCCAAAGGCTCATCTCTCTTCTTCAGCCAGAGCGTCCCTGTCAACTTCGAATGGAAGAGACCCGGGGAAATCTGCAAAGATCCTAAGTTCATTGTTGGAGGAGCGGACAGGACAGACATATGTCAAGGACAGCTGGgagactGTTGGTTGTTAGCAGCGATCGCCTCCCTGACACTGCAAAAGGAGATCCTGACGAGGGTTGTACCACCTGACCAGAGTTTTGATCTCGGCTACGCTGGCATCTTTCACTTCCAGTTCTGGCAGCATAACCGATGGCTGGATGTGGTTATAGACGACAGGCTGCCGTGTGTGAGGAACAAACTGGTGTTCCTCCATTCAGCCGAGAACAACGAGTTCTGGAGCGCGCTGCTGGAGAAGGCCTATGCCAAACTGAACGGCAGCTACGAGGCTCTGAAGGGAGGCAGCACCCTGGAGGCCATGGAGGACTTCACTGGTGGAGTCGGAGAAATGTACGAGACCAAGAAAGCTCCCACAGACCTTTTCGTTATCCTGAAGAAGGCGCTGGATAGAGGATCTATGATGGGCTGCTCCATAGACatcACCAGCTCAGCTGAATCAGAAGCTCAGACTTCCACAGGCCTGGTCAAAGGTCATGCCTACTCCATCACCGGGCTGGCAGAGgTGAACTATAGAGGGGGGAAAGTGCGACTGGTCCGTATCAGAAACCCCTGGGGTCAGGTGGAATGGAACGGCCCCTGGAGCGATAATTCCAGAGAGTGGAGTATCGTTGATAAAGCAGATAAGATCAGACTGCTTGAAAACTCCACAGATGATGGAGAGTTCTGGATGGAGTTTGAGGACTTCAAGGCGAACTACGACAGGGTAGAGCTGTGTAACCTGACTCCAGACTCCCTGACAGATGACAACAAGAAGAAGTGGGATGTGAACATGCTGGAGGGCAGCTGGATTCGGGGCTCCACTGCCGGAGGCTGCAGGAACTACATTGACACCTTCTGGACGAACCCTCAGTTCAAGCTGAAGCTAGAGGACGCGGACAACGATAATCAGTGCAGCGTCATCGTGGCCCTCATGCAGAAGAACCGGCGCAGACTGCGCAAGGAGGGGCTCGACCTGGAGACCATCGGTTTCGCCATCTATCAGTCCCCTGATAATGAGGACCACGCAGACAAGGATTTCTTCCGCTTTAACGGTTCAAAAGCACGCAGCCGGACCTACATCAACACACGTGAGGTGTCCGAGCGTTTCGCCCTCCCACCGGGCAACTACCTGGTGGTGCCCACCACCTTCCAGCCCCACCAAGAGGCTGACTTCCTAGTGCGCATCTTCTCTGAGACCAAAGCCGGAGCATTggAGATGGGCAACACTATCGATGCTGACCTGCCTGATCCACCAATGCCGACTCGGCGTGAGGAGGAGACTGATGAGGAGAAAGGCCTGAGGAAGCTGTTTGAACAGATCGCTGGCTCAGACCAGGCCATCAGCGCCAGGGAGCTGCAGGACGTCCTAAACGGAGTACTGAGCAGGAGGAAAGAGATTAAATTTGATGGCGTGAGTCTGAACACCTGTCACAGTATCATCAACCTGATGGATGTGGACTGCTCGGGAATGATCGAGTTTCAGGAGTTTAAGGTCTTCTGGGAAAAGCTGAAGAAATGGATGatgttgtTCCTGTCTTTTGATACAGACCGGAGTGGACGCATGTCCTCCTACGAGCTACGGTCTGCTCTCAAAGCAGCAGGTATGCAACTGAATAATCAACTGCTTCAGCTGATAGCATTGAGGTTCGCAGATGATAATTATGAAATCGACTTCGACGATTACCTCACCTGCATCGTCCGACTGGAGAACATGTTCCGAGTTTTCCAAGCCTTGGACACAAAAAACAGAGGAGAAGTGACCATGAACTTTCAACAAtTTTTGATGCTGGCCATGAATGTCtgaagagaggaggaaaaatgaatgaatgaatgaatgaatgaataaaacctGAGGAAGTGAGAAGGACAGCCCTGGCCCATGTGTTGCTTAAAGAACTATTCTGAAATATATAACTTTACCAAAACACAGATTCCTCCgaactgaaattaaatttcaCCTGGGAAATCAATTACACTGGAAATGATTCGAAGACTTTATTGATCGGATGTTGGATTCACGCTCAGAAATCTGATCCTACACACGTTATGGTCTTTAAATGTTTGCTTTGGTTTGATTTGGCTGActgtgaatcattttttttcaagattttaaGTACTGGCTtgtgctgaaaataaataaattcacacacaatcTGTGTAAAagctgtgtaaatgttttttcaagaatgaacataataataaagctgACACCTTAAATTGGATTTGATTTCAAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08578 CAPN9; calpain-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445229 lncRNA upstream 34429 14553837 ~ 14630233 (+) False G375973
TU445236 lncRNA upstream 34429 14553837 ~ 14630233 (+) False G375973
TU445225 lncRNA upstream 65308 14553837 ~ 14599354 (+) False G375973
TU445495 lncRNA downstream 108660 14790046 ~ 14790471 (+) True G376191
TU445508 lncRNA downstream 124332 14805718 ~ 14866892 (+) True G376202
TU445558 lncRNA downstream 191837 14873223 ~ 14873501 (+) True G376245
TU445552 lncRNA downstream 229339 14910725 ~ 14916443 (+) True G376242
TU445589 lncRNA downstream 296387 14977773 ~ 14977978 (+) True G376273
XM_026931766.2 mRNA upstream 5768 14653247 ~ 14658894 (+) True taf5l
XM_034300292.1 mRNA upstream 116110 14533010 ~ 14548552 (+) True spred2a
XM_026931770.2 mRNA upstream 198934 14442504 ~ 14465728 (+) True ppp3r1b
XM_026931708.2 mRNA upstream 223368 14435948 ~ 14441294 (+) True cnrip1a
XM_034300249.1 mRNA upstream 230656 14431059 ~ 14434006 (+) False LOC113537569
XM_026931637.2 mRNA downstream 998 14682384 ~ 14694809 (+) True ltv1
XM_026931638.2 mRNA downstream 998 14682384 ~ 14694809 (+) False ltv1
XM_026932337.2 mRNA downstream 35338 14716724 ~ 14719276 (+) True LOC113537710
XM_026932251.2 mRNA downstream 44581 14725967 ~ 14730341 (+) True LOC113537648
XM_026932194.2 mRNA downstream 83394 14764780 ~ 14786899 (+) True LOC113537613
TU444908 other upstream 622048 14023250 ~ 14042614 (+) False G375711
XR_004577362.1 other upstream 643531 14016523 ~ 14021131 (+) False gpalpp1
TU442901 other upstream 3655042 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 4788109 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 6510807 8149960 ~ 8153855 (+) True G372351
TU445701 other downstream 398354 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 433086 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 667868 15349254 ~ 15349325 (+) True trnaq-cug_18
TU445810 other downstream 740013 15421399 ~ 15424798 (+) True G376467
TU445848 other downstream 809660 15491046 ~ 15492518 (+) False G376488

Expression Profile