GENE ID: ENSDARG00000099448


Symbol Location Gene type Genome version Species
sh3d21 16: 35905031 ~ 35938157 (+) protein_coding GRCz11 Danio rerio

MARKER



EXPRESSION


Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Microglia (cluster: 18)
Cranial ganglion (cluster: 22)
potential marker
potential marker
NA
NA
GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Eye (endothelial, progenitors) (cluster: 13)
potential marker
NA
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Periderm cells (cluster: 16)
Epidermal cells (cluster: 8)
potential marker
potential marker
NA
NA
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Periderm cells (cluster: 16)
potential marker
NA
GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
potential marker
NA
GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
potential marker
NA
GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo Epidermal cells (cluster: 4)
potential marker
NA
GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells SHFP (cluster: 10)
potential marker
NA
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos NCC ionocytes (cluster: 1)
HR ionocytes (cluster: 5)
potential marker
potential marker
NA
NA
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Periderm cells (cluster: 4)
Epidermal cells (cluster: 9)
potential marker
potential marker
NA
NA
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 13)
Epidermal cells (cluster: 16)
potential marker
potential marker
NA
NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 12)
Epidermal cells (cluster: 14)
Epidermal cells (cluster: 22)
potential marker
potential marker
potential marker
NA
NA
NA
GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Epidermal cells (cluster: 10)
potential marker
NA
GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Epidermal cells (cluster: 12)
potential marker
NA
GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Epidermal cells (cluster: 11)
Epidermal cells (cluster: 12)
potential marker
potential marker
NA
NA
GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Epidermal cells (cluster: 8)
potential marker
NA
GSE158142 (24hpf) head baseline 24hpf, untreatment Epidermal cells (cluster: 7)
potential marker
NA
GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Epidermal cells (cluster: 10)
potential marker
NA
GSE158142 (2dpf) head baseline 2dpf, untreatment Epidermal cells (cluster: 5)
potential marker
NA
GSE158142 (3dpf) head baseline 3dpf, untreatment Epidermal cells (cluster: 4)
Periderm cells (cluster: 9)
potential marker
potential marker
NA
NA
PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury Endocardial endothelial cells (cluster: 1)
potential marker
NA
PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury Endocardial endothelial cells (cluster: 1)
potential marker
NA
PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury Endocardial endothelial cells (cluster: 3)
potential marker
NA
PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood Endocardial cells (cluster: 3)
potential marker
NA
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Smooth muscle cells (cluster: 4)
potential marker
NA
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Support cells (cluster: 2)
potential marker
NA
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Support cells (cluster: 4)
potential marker
NA
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Endothelium (cluster: 7)
potential marker
NA
PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Endothelium (cluster: 7)
potential marker
NA
PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Smooth muscle cells (cluster: 10)
potential marker
NA
GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Amacrine cells (cluster: 7)
potential marker
NA
PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) Gills (cluster: 13)
Non-follicular epithelium (cluster: 5)
Muscle cells (cluster: 6)
potential marker
potential marker
potential marker
NA
NA
NA
PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Gills (cluster: 8)
potential marker
NA
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Epidermal cells (cluster: 7)
potential marker
NA
GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Epithelial cells (cluster: 4)
potential marker
NA
GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Epithelial cells (cluster: 7)
potential marker
NA
PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
GSE151354 (wild type) cartilage baseline 21dpf, wild type
GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled)
GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment
PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS
GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated
GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS
GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated
GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS
GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
GSE137784 (no HCC) liver baseline 6mpf, male, isolated from the CreLox zebrafish with HCC
GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis
GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
PRJNA641144 (C_PRO) tumor disease adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (D_INV) tumor disease adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors
GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (D_PRO) tumor disease adult, ZMEL1-PRO cells in vitro individual culture
PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (C_INV) tumor disease adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors
GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-

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