RNA id: TU17699



Basic Information


Item Value
RNA id TU17699
length 76
RNA type TUCP
GC content 0.35
exon number 1
gene id G15838
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5289881 ~ 5289956 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTACAAGTTTATTGAGTCTCAATGGTTTAATGAATGAAAACTGCGATGACAAAACCAGTGCCATGTGAATGGACATGGCAGATCAAGCCTATCCCTTCCTATCTAACATCAACCTCACCTGTCCCATTAGCTGGGGTTAAAGAGAGAGGTGTCATAAAGAGGACTGAGGACACTGCTGTTCTGTCCCAGCCATTCAAACGGCACAACTGGCATTCTTGGCTCACCCGCTGGACCGGAGAAAGCTGCTCAACCCTTTCTCAGATACAAGAGGGAGAACCAGACTACCTTATCTTCTGTTCAAAATCAACAGAATTAATGAGAGAAGAAAAAGATCATCCATATGTCTCACCACAATCATTCATAATTAACTTCTAACCATGACACATGTTGTCCATATTTTTATGAATGAAGAAACGGTCTAAACTACTTTATCTGGCAAAAGGTCACTCTATTCATGAAAACGACCCACAAGAAAGAACATTATAACCTAATTTTACCAGACGTATGTCAATGTTACAAGAATGTCCTATTAAAACAGGTGGATGAATTAGACTGATTGGAACAGTAGAAGATAAACACCACTAAAAAAAACACTTGAAATTTGGATAATTGCATTTAAATCTTTGACAAAATAAATATTGATTGTACTATTAAATATCTTAACTAAGCCGACATTTATGATTACTCAGGCCCCAGTATATATTGGTGTGAGAGTATGTTCAGCTTTGACATGCGTTTGTTAGATGGCTTGAAAGAAAACACATTTGATTGTCATTTAGGATATTTGTTATTCAAAGCGTCTGATTGATCAGGAACTCATTGGAATGTTTTCTTAGTAAACTCGGCTTCATTTTAGTGTGAGGTCTCAAAGGCTCCACCTCATCAAGCAGAAATAATTAAGCTCTGAAAATGGTTTCAAACTCATTTCCGCAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTGAACAATCTAAAATCTGTTGTACTTAACCTTAAAAATCACTTAAACTGCTGAAATTACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17759 lncRNA upstream 3026 5283460 ~ 5283723 (+) True G15895
TU17709 lncRNA upstream 72497 5212269 ~ 5214252 (+) True G15846
TU17743 lncRNA upstream 88994 5197546 ~ 5197755 (+) True G15879
TU17742 lncRNA upstream 89508 5197025 ~ 5197241 (+) True G15878
TU17741 lncRNA upstream 89821 5196661 ~ 5196928 (+) True G15877
TU17702 lncRNA downstream 27530 5317486 ~ 5317900 (+) False G15839
TU17700 lncRNA downstream 27569 5317525 ~ 5317993 (+) False G15839
TU17701 lncRNA downstream 27569 5317525 ~ 5317900 (+) True G15839
TU17718 lncRNA downstream 47164 5337120 ~ 5341892 (+) True G15854
TU17776 lncRNA downstream 67674 5357630 ~ 5357902 (+) True G15911
CI01000001_05270301_05279405.mRNA mRNA upstream 5942 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05223340_05229184.mRNA mRNA upstream 57090 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05075984_05079729.mRNA mRNA upstream 207018 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05071017_05075175.mRNA mRNA upstream 210996 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05051664_05059659.mRNA mRNA upstream 226809 5051529 ~ 5059940 (+) True CI01000001_05051664_05059659
CI01000001_05365373_05384192.mRNA mRNA downstream 75206 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05401665_05402500.mRNA mRNA downstream 111709 5401665 ~ 5402771 (+) True CI01000001_05401665_05402500
CI01000001_05427300_05427801.mRNA mRNA downstream 137276 5427232 ~ 5427818 (+) True CI01000001_05427300_05427801
CI01000001_05478200_05480124.mRNA mRNA downstream 188244 5478200 ~ 5480504 (+) True CI01000001_05478200_05480124
CI01000001_05487409_05494726.mRNA mRNA downstream 197346 5487302 ~ 5495336 (+) True CI01000001_05487409_05494726
TU17650 other upstream 222045 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 222820 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1665298 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3615745 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 4241597 1043713 ~ 1045152 (+) True G13051
TU17891 other downstream 421929 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2242616 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2242684 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2242808 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 2742168 8032124 ~ 8032483 (+) True G17234

Expression Profile