RNA id: CI01000001_08208872_08234456.mRNA


Basic Information

Item Value
RNA id CI01000001_08208872_08234456.mRNA
length 2437
RNA type mRNA
GC content 0.47
exon number 11
gene id CI01000001_08208872_08234456
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8208083 ~ 8234580 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAAGTCATGCGGTGCATAAACAACGATGTGAGCCAGACCCCTTTGGTAATCTGGGAGATGCATTATGAATGCTTAATCAGAGTATATACGCCAAGAAATATGCTTGAGATATACACCAATGCCTTTAGCTTATTATTCTACCACGCCTTGAGCCGTGAATCATCTTTACTCAATCAAAAGTTTGTCTAGGTCCAAAATGGGAATGTCTTGGGAACATGAGTCTGTAACAAAACTAACCTTAGGTTACGCTCTCCTCGTTTTCCTCATATGTAACACATTAAGCATGATGTTCCACCCGGCAGGAGGCTGGCAAGATCTCTTCCAGCTGTTGTTCTGTACTGTTTCCCAGCATGCCTCATTCTGAGGCTGTGTCCATCATGATAGGCTCTGATTTGCCTCAATTAGTTCAGCCTGAACATTCAGCTCAGACTGTAGGAATGCTGTTTTTTGTAGCTCCAGAAATTAATGAGCCCGTCCGAGAGGCCCTCCCAGGAGTCAAACCAGGCTCCAGGACTACCTACCGACCCCGGGGCTCTAGAGCATCGGCTTGACCGCAGGCACATGGCTCATGGCTCGTCCCTTTAGGACCCTGCCGTGAGGATATACTCATGGTAAAGCATTATGTATTGTAAGAAAAATGTTCTTGTGTTTTCAAGCTGCTTTTGAGAAGAGCTAGTTAGGCATCTTAGTGATCATTAGATTCGTATCAATATTTCAGTCACACTTTGCATCGTGGGGAGATGCCAGCAGGAGAGCTGTTTCAGATGCTGCATCTTATCACAACATGAGAAAGCGTGCAGATGTCATTTGCATTTCTCTTCATGCACTGCTTGCGTCTGTCTCTAAACCATCTCACTCATCGTTCTCTTTGCAAAGTGCTGCATACATCTCCCTTTCTATCAGCCCGTCTTTTGCTTTGCTATTTGGTGAGGATGTCTGCCGTAGGCTCGGCTGGATGAGATTGAGGTGTCTGCCATTGATGCCCGAGGAAAAGAAGGGGGCACACGCTCTGGATAGGGCCCAGCTAAGCTCGCACGACAATCCATACTCCTTTATGCGGTGTAATTGCGCAGATCTGAGAGCTCAACAGAACAAAAAACGCGCGGCAGTGAACTCAAGCTCCTGTGATCCATTATACCGTCTTTGCGGTTACCTTGTAAAGCTCTCTCTGCTGCATAGTCCTTCAGACTTTTTTTTTTATAAGATTACAGAATCTACAGAATCTTTTATAAGATGCTCAGAAATGAATTTGAGGGGTCAGCGCAGATCTATTTTCCAGTCAGACAGCAGCACCTGGAAACACTGCAGTCTTATCCATCACAGAAGAGAAACAGCCACCTTCAGACAGCTGAAAAGGAAACAGGCATGTACCATTAACCTCTCAAATAACCCTATGGGAGGTACACAGGAGATTTCTGCTGCCATATTACACTGCTGCGAGATCTCTGTTTTCCTAGGCTGCTCTCGATCGTCATTACCGTTTCTAGAATTAAGCGTTTACGTTATTGATTTTGGCTTTAGATTGTTTAGAGCTGTATTTTATGATAAACGCAAATGTGAGGCAGATGAATATGCATGTCCTATCTGGGTGTCTCCAATCCATCGAGTCAGCTCACAGATGAGGCCCAGCTGGAGCCAGGAAAGACCCAGACCGGTCGGCATGGCAACCTCAGTACCAAACCGCTCATGCAACATTCATGCTGACCTTTTATTTGTCTGGCTTTGGCCTTCTCGTGGCCCTTTTGCGCTGCCCCTGGCCCCTGTGCGATGTTCTATGGCCTCATACAGTCTGATTGTTACTTCTGAAGTAGAATCAAGTAAAAGAAAGAATGGGAGTAAAGGCTTCATCCCAAAGGGAGTAAACACTTCACCACGGGAGAGTTTTAACCAAGAGTCATCGCTGGGCTCAGAGTCACAGACCATTCAGATACTGAGTCTAGATCCAGGTTGCAGAGGAAAGCTGTGTGGATTTGGAGCGTTGTGTGAAAGAGACCCGGCTGACCCCTCTAAAGGAGAATGTGTGTGTAAGAAGATTGTATGTTCGTCTGTGGTGGCGCCGGTGTGCGGATCCGACTCCTCCACCTATTCCAATGAGTGTGAGCTGGAGAAGGCCCAGTGCAATACACAGAGACGCATCAAAGTGATGCGCAAAGGCCCCTGTGTTGAAGTTCGGCTCCATGCTAATCGCTGCTGGCTCCTCAGCAGGGCTTTAATGGGCAGTAGCCTCCCTGCTATTGCGCTAATGAAATTGACAGTGTGGCTATCAGGGGTCATATCTCTCTCGCTCGAATGGGATCAGCTGCCATAGATAACGGGCGGTTCAGTGTTTTTCCTGAGCAGAAGGGTTGAGATGGGAGCTGAGTCAGGTTAGCTGCTGTTCTTTGCAAGGTTCTACTCTGGTAGATTACCCCTTGCCAAGCACAAAGTAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19366 lncRNA upstream 126341 8081512 ~ 8081742 (+) True G17252
TU19330 lncRNA upstream 169440 8038244 ~ 8038643 (+) True G17216
TU19350 lncRNA upstream 172899 8034979 ~ 8035184 (+) True G17236
TU19347 lncRNA upstream 177533 8028234 ~ 8030550 (+) True G17233
TU19268 lncRNA upstream 244181 7962777 ~ 7963902 (+) True G17177
TU19329 lncRNA downstream 44773 8279353 ~ 8282894 (+) True G17215
TU19323 lncRNA downstream 156483 8391063 ~ 8396912 (+) True G17209
TU19414 lncRNA downstream 258854 8493434 ~ 8493705 (+) True G17292
TU19416 lncRNA downstream 272187 8506767 ~ 8508481 (+) True G17294
TU19292 lncRNA downstream 280288 8514868 ~ 8515415 (+) True G17188
CI01000001_08174175_08184832.mRNA mRNA upstream 22209 8173283 ~ 8185874 (+) True CI01000001_08174175_08184832
CI01000001_08113500_08119591.mRNA mRNA upstream 88376 8113164 ~ 8119707 (+) True CI01000001_08113500_08119591
CI01000001_08091363_08093148.mRNA mRNA upstream 114821 8089922 ~ 8093262 (+) True CI01000001_08091363_08093148
CI01000001_07935720_07951221.mRNA mRNA upstream 256174 7935720 ~ 7951909 (+) True CI01000001_07935720_07951221
CI01000001_07908382_07926320.mRNA mRNA upstream 281606 7908382 ~ 7926477 (+) True CI01000001_07908382_07926320
CI01000001_08248565_08260072.mRNA mRNA downstream 13985 8248565 ~ 8260101 (+) True CI01000001_08248565_08260072
CI01000001_08271059_08344201.mRNA mRNA downstream 36479 8271059 ~ 8344201 (+) True CI01000001_08271059_08344201
CI01000001_08365139_08380569.mRNA mRNA downstream 129649 8364229 ~ 8380694 (+) True CI01000001_08365139_08380569
CI01000001_08427984_08438912.mRNA mRNA downstream 193404 8427984 ~ 8439430 (+) True CI01000001_08427984_08438912
CI01000001_08444733_08450428.mRNA mRNA downstream 210153 8444733 ~ 8450924 (+) True CI01000001_08444733_08450428
TU19348 other upstream 175600 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 667497 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 667497 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 667623 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 2493132 5711885 ~ 5714951 (+) True G15995
TU19478 other downstream 981442 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 999883 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 1183748 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 2005320 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 2022532 10257112 ~ 10260714 (+) True G18873

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1563443 True 560 lncRNA 0.45 1 NC_048580.1 35670426 ~ 35670985 (+)