RNA id: TU19330


Basic Information

Item Value
RNA id TU19330
length 400
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G17216
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8038244 ~ 8038643 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAGGGGAATTGGGGGAATACTCTTGCTGTTTGCCACCAACGTTTCTTCATAGCTGAATCACGTATTTCTGCATTCACAAACTGCGTGAACAACATTCCGGTACACTTGACGCCAGTATGGTTAAACTGATAAATCGTGTAATTTTAATCAACATAAAAACTTTATACTGTATTTTTATACAGGTAAAAATAACGTATTTCACCAGAATGTCACCTATTCGAATTATTACTATAACCAATACACTACCATCAACGATATTACAACCATATTGTCTTGCAAATTATTGTTAAGATTGTATTTAATTGCACCGGATTTCATTGGAAAGTTGCATTGGACATTATTTATTATTTATTTCATAAAGGAAATGTCCAATGCAACTTCGCGAACATGCATTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19350 lncRNA upstream 3060 8034979 ~ 8035184 (+) True G17236
TU19347 lncRNA upstream 7694 8028234 ~ 8030550 (+) True G17233
TU19268 lncRNA upstream 74342 7962777 ~ 7963902 (+) True G17177
TU19191 lncRNA upstream 132220 7874209 ~ 7906024 (+) True G17103
TU19227 lncRNA upstream 245632 7792204 ~ 7792612 (+) True G17137
TU19366 lncRNA downstream 42869 8081512 ~ 8081742 (+) True G17252
TU19329 lncRNA downstream 240710 8279353 ~ 8282894 (+) True G17215
TU19323 lncRNA downstream 352420 8391063 ~ 8396912 (+) True G17209
TU19414 lncRNA downstream 454791 8493434 ~ 8493705 (+) True G17292
TU19416 lncRNA downstream 468124 8506767 ~ 8508481 (+) True G17294
CI01000001_07935720_07951221.mRNA mRNA upstream 86335 7935720 ~ 7951909 (+) True CI01000001_07935720_07951221
CI01000001_07908382_07926320.mRNA mRNA upstream 111767 7908382 ~ 7926477 (+) True CI01000001_07908382_07926320
CI01000001_07811962_07871073.mRNA mRNA upstream 167171 7811962 ~ 7871073 (+) True CI01000001_07811962_07871073
CI01000001_07678904_07760870.mRNA mRNA upstream 277374 7678904 ~ 7760870 (+) True CI01000001_07678904_07760870
CI01000001_07577777_07584809.mRNA mRNA upstream 453435 7577725 ~ 7584809 (+) True CI01000001_07577777_07584809
CI01000001_08091363_08093148.mRNA mRNA downstream 51279 8089922 ~ 8093262 (+) True CI01000001_08091363_08093148
CI01000001_08113500_08119591.mRNA mRNA downstream 74521 8113164 ~ 8119707 (+) True CI01000001_08113500_08119591
CI01000001_08174175_08184832.mRNA mRNA downstream 134640 8173283 ~ 8185874 (+) True CI01000001_08174175_08184832
CI01000001_08208872_08234456.mRNA mRNA downstream 169440 8208083 ~ 8234580 (+) True CI01000001_08208872_08234456
CI01000001_08248565_08260072.mRNA mRNA downstream 209922 8248565 ~ 8260101 (+) True CI01000001_08248565_08260072
TU19348 other upstream 5761 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 497658 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 497658 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 497784 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 2323293 5711885 ~ 5714951 (+) True G15995
TU19478 other downstream 1177379 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 1195820 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 1379685 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 2201257 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 2218469 10257112 ~ 10260714 (+) True G18873

Expression Profile