RNA id: CI01000001_08174175_08184832.mRNA



Basic Information


Item Value
RNA id CI01000001_08174175_08184832.mRNA
length 2555
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000001_08174175_08184832
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8173283 ~ 8185874 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATATATCGAGGAGAAATTGACTAGAGGGCTGCACGTTCTAGAACAGACGAATGAGATTTTCACACCCAATCACACTGAACCTCATTGAGGAGTGTCACTTTGTACATCGTGTTAACAAGGATTAGCGTGTGGCCGGTTCTTTGTCAATCTGAGGTATTTAGAATGGGTCAGTTCATCTACAGGTTAATTCATTTTTTTTTTTTTTTTTTGGAATAAGCCGGAACGAAGAGCCGAAGCTGATATGAAAGCGAGGAAAATGAAAATGGGGGTCAGCGCGCAGGATGTGATAGAAAAAAAGCTAAGACGGAGAAAGAAACTGACAAAAAGGAAACGAGAGGAGGTGGTAGTTTTTCTCTCACTGTCCATCATGGCCCACTAATGTATGAATGGTGCGATGAAAATTGATTTCCAAGTGAATTATTCCAGGCTCTCAGCCTTTTATAAGACAATAACCTTTACTAAAGTGCCACTGTCTTGAGTAAGATGAGTTCACTTGTTCATTTCACTACGCATTTTCTTTCTTTCCTCCTTTCTTCCTCTCGTATTTCACTCTCTGACGGAGTCACTAAATAGACCTTGCAATTATAGGCAGACTGTTTTGATCGATAGAGGTGGAAATGATACCGGAGTGATGGGAAAATTATGAAATATGAAGAGCGAGAGGAGCATTTGATTGTGGGATGGAGGAAAAGGGGGGCGACTATTTTCTCAGAGAATGAGTTGTTGCGGGCAGGTGGTAGACAGAGCGTCAGGTCAACTTATTGATCCGCGCATGTGGCCAGCAGACGGGTCAGAGACACACCACGGTGGGCTCCCAGTTGTCCGTCCTCTGGCTGGAATGCCGATGCTCCATCACTGTCAAACTCGGCTTGGTATTTTGACCTGGCAATGGTGAAGCGCTCCTCCATAATGTGCCAGTGTGTGTGTCCTTTTGTCTCTTCCTCATGTGGGCATGTTTGTGAGGATTTTGGCTCCGGCCCCTGGTTCTCCCTCACTTCCTTTAAGCCCAGCGGAGGATTGGTTTTGGCTGGGTCACTGCCTGGCTACAGATGCATTCTGGCTGGTGTCCACAGTCAGCAGTCTGTGGTCAGCGGTCATCGTGCACAATGGAGACGGGACGTCCCCTCTCACTGGTACGGATGCCCCTGTACGGGGGGCCTCCTCTCAGCTATGAGCCAAAATGTTGTGTGGATCTTTTTGAAGAGTGTCACATGGCAACGGCCCTCCGGAACACTGGGACATGGAGCCAATTTGTTGCCTGGTGAGATATATGAAAGAATAGTGTTGATTCAGGGTCCGGATAGAATCTTGGAGGAAATTCTTCGTCCACGGTTGTTATTGCGGTCCCTCTTTGTTGGTTTGCAGCTCTCAGCCCGGGGCAGCTGCGCTCAACAGCTTGGTCCCGGAGTGAGGAGCAGTCTGAGTGGGAGGGTAATGAGCTTGCTCCACCCAGAGTTGAAGATCCAGCTGTGGGAGAAGAATCGTCCTCGCTTGCATATCTTTGCTTAGGCAGGTGGTTTTATGGTGGGGAGGGAATCGGTTTGGGAATATGGTAATACGTGTGATGGTAGAACTCTCTTTAATATCTCATTTGTTCTCCTCGACAGTAGTGAGATTAAATGGAGTGCAAATTGGCTTGAGGCTGTTTCTCAGATTTGATGTCTCTGAACATAGTCATCTCAGATTTGTCTTTTCTAAAGTTTTGAGAGAGATCATAACAATGTCTCATACTGTGCTCAGATTTGCTTGGATATTTCACTTTGAACTCGTCATTTCTCATCAAATCCTTCCAAATCTATCAATGAACATGTATACATTTATTTTGTGATCTGCTAAAGATTACATTTTACAGTGTTATTCAATTATTATTTTTTAAAGGTTAAATTATGTTAAATGACTGCAAAGTTATTCTAAATCTAAAAATTAGGGAAATGCACATACAATATTAGCTGATACCAATAAATAAATAAAATCTCTAATATATGTCAATTACAGATATGGTATTGATCTATTGTGAATCGCTAAACGACGTAACAAAAGATGCTAATTAACTTTCCTGAGCAATGAAAGAGCAACGTCAGACTAATAAAATCTTCCTCTGGAATGATTTATTTGCTCCTTCCTTGATATATGGGAGAAGGTTGGATTTATGTGATGGTGGTTTTCATCAGTCCTAAAGCACTTAACCTGAGTGGCGGTGGGTATCCTCAACCAAAATCAATATGTGATGTACGGTATATGGCCATGTGCTGAGCACACATCGACTAATAGGTATTAGGGCGAGGACTGGGTAAGGAAAGAAGGATTAGGGTAATTGTGTTTTATCTGCCATGGTCTTTAGTGGATTGTACCAAGGACACACACACACACACACAATAGATAGAGAGATAGAGAGACCTCTCTAGTGACCTCTACAATGTAGATAGCAGTGAACTAGAGTGGAACAGGCTCTCACACTGTGCAAGCAGATAAAGATCAGATTTGAAAATCGCATTTATGGAGCAGAACTCCTTTTGAATTATTCAAATAAGAAGAATGGTCCTAAAACATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19366 lncRNA upstream 91541 8081512 ~ 8081742 (+) True G17252
TU19330 lncRNA upstream 134640 8038244 ~ 8038643 (+) True G17216
TU19350 lncRNA upstream 138099 8034979 ~ 8035184 (+) True G17236
TU19347 lncRNA upstream 142733 8028234 ~ 8030550 (+) True G17233
TU19268 lncRNA upstream 209381 7962777 ~ 7963902 (+) True G17177
TU19329 lncRNA downstream 93479 8279353 ~ 8282894 (+) True G17215
TU19323 lncRNA downstream 205189 8391063 ~ 8396912 (+) True G17209
TU19414 lncRNA downstream 307560 8493434 ~ 8493705 (+) True G17292
TU19416 lncRNA downstream 320893 8506767 ~ 8508481 (+) True G17294
TU19292 lncRNA downstream 328994 8514868 ~ 8515415 (+) True G17188
CI01000001_08113500_08119591.mRNA mRNA upstream 53576 8113164 ~ 8119707 (+) True CI01000001_08113500_08119591
CI01000001_08091363_08093148.mRNA mRNA upstream 80021 8089922 ~ 8093262 (+) True CI01000001_08091363_08093148
CI01000001_07935720_07951221.mRNA mRNA upstream 221374 7935720 ~ 7951909 (+) True CI01000001_07935720_07951221
CI01000001_07908382_07926320.mRNA mRNA upstream 246806 7908382 ~ 7926477 (+) True CI01000001_07908382_07926320
CI01000001_07811962_07871073.mRNA mRNA upstream 302210 7811962 ~ 7871073 (+) True CI01000001_07811962_07871073
CI01000001_08208872_08234456.mRNA mRNA downstream 22209 8208083 ~ 8234580 (+) True CI01000001_08208872_08234456
CI01000001_08248565_08260072.mRNA mRNA downstream 62691 8248565 ~ 8260101 (+) True CI01000001_08248565_08260072
CI01000001_08271059_08344201.mRNA mRNA downstream 85185 8271059 ~ 8344201 (+) True CI01000001_08271059_08344201
CI01000001_08365139_08380569.mRNA mRNA downstream 178355 8364229 ~ 8380694 (+) True CI01000001_08365139_08380569
CI01000001_08427984_08438912.mRNA mRNA downstream 242110 8427984 ~ 8439430 (+) True CI01000001_08427984_08438912
TU19348 other upstream 140800 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 632697 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 632697 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 632823 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 2458332 5711885 ~ 5714951 (+) True G15995
TU19478 other downstream 1030148 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 1048589 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 1232454 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 2054026 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 2071238 10257112 ~ 10260714 (+) True G18873

Expression Profile