RNA id: CI01180000_01372608_01374455.mRNA



Basic Information


Item Value
RNA id CI01180000_01372608_01374455.mRNA
length 2506
RNA type mRNA
GC content 0.34
exon number 2
gene id CI01180000_01372608_01374455
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1370761 ~ 1374547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTATAAAACGAGTGTGCATGCTAAAACGTGTGCCATGCTTTTTGGGTTCACTGAAGTGTGTCAAGTGAACCCACTGACACAATGTCATTCTACCCTGCGTTTCCAAGTGCAGACAGTCTGTAAAACCTCTTTTCCTTCTTTTGATTGGCTGTAAATTTCTCAGGAAATGGTAACCATAGCAACCCCTGCGCTCACCAGGATAGCCCCACTGACAAGCAACATCCTGTTTACTGTGTTGCTATTTTTTCTCTCCAGCTCATGAATTCAACTGAGAATCGTAACTCGCAGCAGAAACAGTCTGTTGTACAACAGCCTCAGTTTTGTGATTACTAACCCATCTACAGTCTGTACATGCTGTACATTATTGCACATGCTTCAATATAACATTAATATAACATATCATTGATTGATTGATTTCACAAAGAGGAGAATATTCACTTGCAAAACAGCCAGAAATAGCCTGATTTTTTTTGCATACCACCCCACTACTGTATTGTGTATTGTATTTTCTGCATTTAGCAGACGCTTTTATACAAAGTGACTTACAACAATCTGTACATAATGTGTACATATTGACTTATATATTGTATGTTGATATGTACTTGATTCTTTTGATAAAGTACATATAAAGTATAATAAATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGTCAAATTGATTAATCATGAGTAATTGCATCTAACAAAAATACATGTGAGTGCTGTCAAATCAATCGCGATTAATCACATAACATAAGTTTGTAAATATATATATTTACATACATAAATGCATATATACATATATAAATAGATATATAAACTTATGTTAGATGCGATTAATCACGATTAATTGATTTGACAGCACTCACACATATTTTGTTAGATGCAATTACTCATGAATAATCAATTGACAGTACACACACACTTATGTTAGATACAATTACTCATTTGACAACACACACAAACTTGTTAGATGCGATTAATCGATTTAACAGCATATATATATATATATATATATATATATATATATATACATACATATATACACACATATACACACACACACACCATTTGTGTTAGATGCGATTACTCATGATCAGTCGATTTGACAGCACATAAATACAAACTTTTGTTGTGATTAATCGCGATTAATCGATTTAATAGTACGTATATATATACACACACACACAATTGCTAGATGCGATTATTCATGATTAATCGATTTGACAGCACATATACAGACACTTGTTAGATGTGATTAATCGTAATTGATCGATTTAATAGCACATATATATATATTATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATTATACACACACACACACACACTTACAAACTTAGATGTGATTAATTGTGATTAATTGATTTGACAGCACTAACACACACACAGAGACACAAATACTCCAACTTGAAACTGATTTGCTTTGATAAATTACTAATAACAAAATTATGCACACTCAAAACAGTAAGTCATATATTCATCTGGTTGTAATGAACCATTTGCGCTATATTGACAAAAAATTACTCATTGGAGCATTCTCACTTTGTCGGTGCAAACGGCAAACATTTCGTGACATCGGGGAGGTAGAAGAGCAATTATAAAATGGAGGAATTTAGTCAAAATGGAGGGCCTGAGAGAGGAGCAGAAAAAAATGTGCTCGGCGTCTGGAATCTGGGGGCTGGAGGCTGCAGAGGTGATGTCATTGGAGCAGAGGAGCTGGGAGAAAAACAAGTCTCTTTCTTTATTCAGATCCTCTTTGCAGTCCCAGCAGGGGTGGGAGGGGAGGGGAAGGGAGGGCGGCTTGGCAGGCGGCCGTGGCAGGGGCTGCTGGGAAATGGTAAAGGATGCCAAGCAGGCTCTGCAGCCAACATTAGTGGCTCACATCTTTGTTCTCTGAAACCTGGTGTGCTGCCAAAAGCCTCATTTCAGTTCCCCGCCATGATTACACTGGATGTAGGCCAATTCCTGAGAGCTCGCAATCCTCTCTGTTGCTCTCGCTCTCCTTCAAAGGCTCGCTGCCAAACATGCAGCAGTTTCCATGGCGACGGCGAGCGGAACATAAAAGCGTATTGTTATGCATGTGCACTCAATAATGTTCATTTATCTCTACCGAAAAACACTTTCATTATCGGCTATGATATTACTGACCACAAGTCAGTTCATCCATAAAGTCATGATGCAAGTAGCTTTTCCCGACTATGAACACCTGACAGTCAGACAGAGTAAAATAATCTTAAGTGAAAGAATGTGCTTATATTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU799569 lncRNA upstream 13169 1349918 ~ 1357592 (+) True G678891
TU799508 lncRNA upstream 52507 1259352 ~ 1318254 (+) False G678838
TU799507 lncRNA upstream 52507 1286868 ~ 1318254 (+) True G678838
TU799497 lncRNA upstream 66932 1250996 ~ 1303829 (+) True G678832
TU799524 lncRNA upstream 67033 1288700 ~ 1303728 (+) True G678853
TU799606 lncRNA downstream 53505 1428052 ~ 1428339 (+) True G678928
TU799546 lncRNA downstream 55326 1429873 ~ 1430967 (+) True G678868
TU799607 lncRNA downstream 56958 1431505 ~ 1431741 (+) True G678929
TU799547 lncRNA downstream 57418 1431965 ~ 1432863 (+) True G678869
TU799629 lncRNA downstream 143806 1518353 ~ 1612547 (+) False G678946
CI01180000_01196818_01224406.mRNA mRNA upstream 145846 1196786 ~ 1224915 (+) True CI01180000_01196818_01224406
CI01180000_00955725_01050852.mRNA mRNA upstream 318935 954922 ~ 1051826 (+) True CI01180000_00955725_01050852
CI01180000_00947514_00949868.mRNA mRNA upstream 419855 946421 ~ 950906 (+) True CI01180000_00947514_00949868
CI01180000_00862066_00867985.mRNA mRNA upstream 502649 860746 ~ 868112 (+) True CI01180000_00862066_00867985
CI01180000_00812535_00858607.mRNA mRNA upstream 511756 811857 ~ 859005 (+) True CI01180000_00812535_00858607
CI01180000_01380859_01385445.mRNA mRNA downstream 6154 1380701 ~ 1385783 (+) True CI01180000_01380859_01385445
CI01180000_01492241_01493781.mRNA mRNA downstream 117124 1491671 ~ 1494446 (+) True CI01180000_01492241_01493781
CI01180000_01542059_01545609.mRNA mRNA downstream 167512 1542059 ~ 1546080 (+) True CI01180000_01542059_01545609
CI01180000_01576739_01578505.mRNA mRNA downstream 202192 1576739 ~ 1579406 (+) True CI01180000_01576739_01578505
CI01180000_01747067_01755038.mRNA mRNA downstream 372520 1747067 ~ 1755257 (+) True CI01180000_01747067_01755038
TU799296 other upstream 215089 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 304670 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1219109 147934 ~ 151652 (+) True G678440
TU799630 other downstream 143806 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 420623 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 1014320 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 1315215 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 1319860 2694407 ~ 2695436 (+) True G680192

Expression Profile