RNA id: TU429706


Basic Information

Item Value
RNA id TU429706
length 654
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G378043
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21111749 ~ 21112557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagcagtatctagaacaacccgactgacagaggagcagtatctagaacaacccgactgacagaggagcagtatctagaacaacccgactgacagaggagcagtatctagaacaacccgactgacagaggagcaGTACCtagaacaacccgactgacagaggagcaGTACCtagaacaacccgactgacagaggaggagtatctagaacaacccgactgacagaggagcagtatctagaacaacccgactgacagaggaccagtatctaGGAACAACAAGTGACTGAACTGGCTCGACCAGACAGACATGTAGAGAACAGTCAGCTACCAACACAGAGAAAGACTGGTCTTTCAGATAGCAGAGTGCACCGAGTGAGATGTAGACAGAAAGAGACTGGTATACAGGCACACTGTCCTTAGTAGTGTGGACTAGCTAGGACTCTTACAGAGTGTGAACTTGGTAGTGTAGACCTGTTAGCGGTCTTACAGAGAGTGGACTTGCGTAGCTGGTAGTTGTCATAGAGCTCCTGTAGGTGGCGGTAGCGTGAAGTGAGCTGGTTCTTCTGAAGGTCCAGACTGGGCTGCAGTTGGAGGTTCTGTTCTGCCAGACTGATGTTACTGACCAGGGTCAGCTCCTTCACCTGCTGCACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429685 lncRNA downstream 1303 21086727 ~ 21110446 (-) True G378025
TU429690 lncRNA downstream 11478 21098848 ~ 21100271 (-) True G378030
TU429667 lncRNA downstream 43938 21065505 ~ 21067811 (-) True G378008
TU429654 lncRNA downstream 63225 21048225 ~ 21048524 (-) True G378000
TU429649 lncRNA downstream 75921 21033897 ~ 21035828 (-) True G377995
TU429707 lncRNA upstream 6938 21119495 ~ 21131747 (-) True G378044
TU429718 lncRNA upstream 46586 21159143 ~ 21160097 (-) True G378055
TU429721 lncRNA upstream 52754 21165311 ~ 21165667 (-) True G378058
TU429722 lncRNA upstream 53174 21165731 ~ 21166096 (-) True G378059
TU429724 lncRNA upstream 54056 21166613 ~ 21166865 (-) True G378061
XM_021602066.2 mRNA downstream 92783 21007925 ~ 21018966 (-) False LOC110523399
XM_021602056.2 mRNA downstream 260525 20843391 ~ 20851224 (-) False LOC110523394
XM_021602057.2 mRNA downstream 260525 20843391 ~ 20851224 (-) True LOC110523394
XR_002473444.2 mRNA downstream 1059907 20044243 ~ 20051842 (-) True LOC110523392
XM_036977011.1 mRNA downstream 1286215 19621025 ~ 19825534 (-) False LOC110523381
LOC110522820 mRNA upstream 47724 21160281 ~ 21162494 (-) True LOC110522820
XM_021602075.2 mRNA upstream 60087 21172644 ~ 21175591 (-) True LOC110523403
XM_021602072.2 mRNA upstream 63591 21176148 ~ 21182979 (-) False tpst2
XM_036977029.1 mRNA upstream 65942 21178499 ~ 21182983 (-) True tpst2
XM_036977028.1 mRNA upstream 71130 21183687 ~ 21271783 (-) True LOC110522821
TU429645 other downstream 81966 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 406609 20704613 ~ 20705140 (-) True G377809
TU429433 other downstream 417041 20694096 ~ 20694708 (-) True G377800
TU426081 other downstream 2552582 18558140 ~ 18559167 (-) False G374786
TU430076 other upstream 679105 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 1064708 22177265 ~ 22179313 (-) True LOC110523434
TU431801 other upstream 1687143 22799700 ~ 22802251 (-) True jmy
TU432173 other upstream 2434643 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 2597241 23709798 ~ 23711891 (-) True G380610

Expression Profile