RNA id: TU429718


Basic Information

Item Value
RNA id TU429718
length 955
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G378055
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21159143 ~ 21160097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGATGAAAGTCAACCTGTCAGTCTAGCATTACAACATGAATGTTTGTTCCTAGGGAGTGTAGATCAGATGTACAGTACCAGGGACTACTATACTATATTCATATTTTAAATGTTTCCTGCACCATCTCATTTTTTAACCCCCATGTGTTTTCCTTGAGGTGAGCACAAATGGGGAAAGCAAACTGTAGATGTACAGCCAGCTGTAGATCTCTTTTCCCCACATGGCAACTTTGACTGGCTTCACAAGAAAGCCAGTGTAACATTAATTTAGGATGCATGGTTATTTTCAATATCCATCTTCCAGTTAGGTGGGGTACCTCTTATACCGGTATACAAAACAATCACTAAAACAAAGTGCCAAGTCAATAGGTAAGATGAGAACATCTTTGGCAGGTCATTCAAATCCATCCCAAAATGTTAGTTCCCTTGTAAAATAGTATATTCCCAGCCTTGCATCCTCCCGACCTACTGGAAAGAACCTCCACCAATGAATAGGAAAGCACCTAGATTAcaatacattttgaattgaaATCAATTTGAGTAGTTCTGTTCAGGGTTGATGGACTAGCTATAGTTGTGACAAATCCAGACTCCTCCCTTTAGACGACTAGGAACTTTAGGGTCAACTATTATCACACCACCTGTCCTGACCTTTGGGGTTACACACAACTTCACGCATACTCAAGTGTGTGCACAGGAAGACACCaccttcagtttacaaaaactaCATCTCATCTACACCGCATATAAATACCAGTCAGAGAGTTAAGTTTTCATATTTCTTCAGATTAATCAGAAAGCTAGTCTTAGAATAAAAACCTAAGAGAATCAACCCCCAGGCTGTAGCTACTGGACGGAGTCTCTGAGGGAGCCTGTCAGGAGTTTTCCCTGTGTTACTGACAGGGGCTGTCATTGGTTAAGTCACCAACACTCATTGTTGGGTCAAAGGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429707 lncRNA downstream 27396 21119495 ~ 21131747 (-) True G378044
TU429706 lncRNA downstream 46586 21111749 ~ 21112557 (-) True G378043
TU429685 lncRNA downstream 48697 21086727 ~ 21110446 (-) True G378025
TU429690 lncRNA downstream 58872 21098848 ~ 21100271 (-) True G378030
TU429667 lncRNA downstream 91332 21065505 ~ 21067811 (-) True G378008
TU429721 lncRNA upstream 5214 21165311 ~ 21165667 (-) True G378058
TU429722 lncRNA upstream 5634 21165731 ~ 21166096 (-) True G378059
TU429724 lncRNA upstream 6516 21166613 ~ 21166865 (-) True G378061
TU429725 lncRNA upstream 6786 21166883 ~ 21167087 (-) True G378062
TU429737 lncRNA upstream 7618 21167715 ~ 21169920 (-) True G378065
XM_021602066.2 mRNA downstream 140177 21007925 ~ 21018966 (-) False LOC110523399
XM_021602056.2 mRNA downstream 307919 20843391 ~ 20851224 (-) False LOC110523394
XM_021602057.2 mRNA downstream 307919 20843391 ~ 20851224 (-) True LOC110523394
XR_002473444.2 mRNA downstream 1107301 20044243 ~ 20051842 (-) True LOC110523392
XM_036977011.1 mRNA downstream 1333609 19621025 ~ 19825534 (-) False LOC110523381
LOC110522820 mRNA upstream 184 21160281 ~ 21162494 (-) True LOC110522820
XM_021602075.2 mRNA upstream 12547 21172644 ~ 21175591 (-) True LOC110523403
XM_021602072.2 mRNA upstream 16051 21176148 ~ 21182979 (-) False tpst2
XM_036977029.1 mRNA upstream 18402 21178499 ~ 21182983 (-) True tpst2
XM_036977028.1 mRNA upstream 23590 21183687 ~ 21271783 (-) True LOC110522821
TU429645 other downstream 129360 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 454003 20704613 ~ 20705140 (-) True G377809
TU429433 other downstream 464435 20694096 ~ 20694708 (-) True G377800
TU426081 other downstream 2599976 18558140 ~ 18559167 (-) False G374786
TU430076 other upstream 631565 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 1017168 22177265 ~ 22179313 (-) True LOC110523434
TU431801 other upstream 1639603 22799700 ~ 22802251 (-) True jmy
TU432173 other upstream 2387103 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 2549701 23709798 ~ 23711891 (-) True G380610

Expression Profile