RNA id: TCONS_00034837


Basic Information

Item Value
RNA id TCONS_00034837
length 3252
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_017531
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38458084 ~ 38519126 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCTCTGACAATCACACTTGAGAAGGGTAAACAGCTCTTACCTCATGGACGCAGATCCAGCGTTCACAGAGAGCTGGACGCTGAACACAGCTACATATTTGCCAGCTCTGGGGTGGATCTAAAGAGGAACCATCATGGCAGGCGACATGTTGTTGCTGATGCGAGGCCTTGCAAGGCTAAGCCAGGCTGTGATCGAGACCCAGGCCAACTCTCTGCGCAGTGGAGGAGTACAGACTATGCAAATGACAGCTGAACAGGCCATGGGCGTCGCCATGCAGAAGATCCAGGAGTTCACAGGCAGTCAACAGAGCGTTTCTGATTTCAGCGCAGACATGGACTCCAAGTATGACTTCACAGCATCAGAGCAGAACTTTGAGAGTGCAGCACATGGAGGTTTGGACAGTGACTCAGTTTTCAGGGACGCTAACACAGGTGCTGCGAACACGTACAGCCAGGCACAGGGAAAATCAAAGCTATTCGATGGCTACAAAGACCCAACCAGCCAATTCACTGGACACACACGATCATATCATCAAGATCACTCTTCTGTGGGAGGCATCACTGCTGAAGACATCGAGAAAGCTAGGGAGGCAAAGCAAAACGGCTCCAAACCACATAAACAAATGCTCAGtgaaagagcgagagagaggaAGGTACCGGTCACACGGCTGGGGAGACTAGCCAATTTCGGAGGTCTTGCTGTGGGTTTGGGTATTGGAGCATTGGCAGAAGTGGCAAAGAAAAGCCTCAGATCAGAGGATAAGAATGGAAATAAGAAGGCAGTTTTGGACAGCAGCCCTTTTCTATCGGAGGCAAATGCGGAGCGTATCGTCCGGACTCTGTGTAAAGTGCGTGGAGCGGCACTCAAGCTCGGCCAGATGCTCAGTATACAAGATGATGCATTCATCAACCCACAGCTGGCCAAGATTTTTGAGCGTGTGCGACAGAGTGCTGACTTCATGCCTATCAAGCAAATGACGAAAGCTCTGAGCAATGACCTGGGCCCGAACTGGAGGGATAAACTGGAGATGTTTGAGGAAAGACCTTTTGCTGCAGCCTCCATCGGTCAGGTCCATCTGGCCAGGATGAAGGACGGACGAGAGGTCGCCATGAAAATACAGTACCCTGGAGTCGCACAGAGCATCAACAGTGATGTCAATAACCTGATGACGGTCCTCAGCATGAGCAACGCACTTCCTGAAGGTCTGTTCCCGGAGCATCTGATAGATGTGATGCGGCGTGAGCTGGCGCTGGAGTGCGATTACATAAGAGAAGCCAAGTGTGCTCGCAAATTCAAGGAGCTTCTGAAAGATCACCCCTTTTTCTACGTGCCGGACGTCATCAGTGAGCTGAGCAGTCAACACGTCCTCACCACTGAGCTGGTGCCCGGCTTTCCTCTCGATCAGGCTGAAGCACTCACACAAGAGCTCAAAAATGAGATCTGTAAAAACATCCTGAATCTGTGTCTGAGAGAGCTCTTCGAGTTCAGATACATGCAGACGGATCCCAACTGGTCCAATTTCTTTTATGATCCACAAACACATCGGGTTGCTTTACTTGATTTCGGTGCGACGAGAGGGTTTGATGAGAGTTTTACTGATGTTTATATTGAGATCATTAAGGCTGCGGCAGATGGTAATCGAGAAGGAGTGTTGAAGCAATCCATAGACATGAAGTTTTTGACTGGTTATGAGTCAAAGGCCATGGTGAACGCACACGTGGATGCGGTGATGATCCTGGGTGAGGCGTTCGCTTCAGAGGAGCCGTTCGACTTCGGAGCTCAGAGCACCACAGAGCGCATCCACAACCTCATCCCCGTCATGTTAAAACAGCGGCTCATCCCTCCGCCTGAAGAAACCTACTCCCTGCACCGCAAAATGGGCGGCTCCTTCCTCATCTGCTCACGTCTCAATGCCAAGATAAGCTGCAAAGACATGTTCGAAGCGGCCTACAGCAATTACTGGAGCGGCCGCAAGAAAGGACCAAGCCAGTGACTGACAGGGGCTTGTCTGTCTAAAAAGAGACTCTGATAAGCACAAAATCGTCTGGCCAATCACTCGAATGTAAAACGAACGGCACTTTTGTCTTGACCGACTCAACCGTACCATCATACGTGTTCGCTTTTTAGCTTtcgcttttttttctttttctccttttGAGTGTGTTAATGGGGAAATAATATCTATAGTCGTGTCATTCAAAGATGGCTATTCTGACTGATGTTTTATTGTGCCTACGGAAATCCAGGTAAGTTGGTTATTCGTCAGGCATGGTTGATTGATTGGCTGTTGAACATTTCATGTCCAAGCCaacagttatttttgtttccGGGATCTCGGACTTTAGTTTGTGAGGATTGACTCATTGAAATCAGTGTATTAACTCTAAGGGaaataagcattatttttctctttCTGGTTTGTGAATTTTGCGCACAATCTTGGCCAAAGTATGATAAAGGGAAGCTCCTGAGAGATGAGATCGGAAAATGGTCGCATATGTTATCTACTGTAGATTGGTTACACAAGCTTGCTTGTTTTAGCCggtaaaaaaacacaacaactttgtcatgatgcattttttaaaagcccAGGATGTTAAATATGATGAGGAATCACTTCTCTGATGTGTGTGAGATGTCTATGAATTTAAATGTGCCTATGAGGAGGTGAGAACTAGAAAAAAGCATCATGGCTTGGTATCAGAGCGATGGTGTTAAAGGCTTTTTTCTAATCTTCCTGCTAATGGCGTTCTtactaaaaaaaattgtgattaaaattgtctgaaaaaaatgattaaattttttttaaatcgacACAACAGTCCTAAATGTTTATTAGTAAGCTTCGTTTTTACATATATACGATGACAAATATACATTGACGCCCCTTTTTTAGGACATGTATTGGTTTAGGATCATCTGAAGTTTGGTCATTGCTTGATCATTTGCTGGGCAGTTCAGAATACCATTGTGTGAGTCATGGAAGAGCACGTTCACATATTCCATAATGTTTGCTTGAGAAGTTGACATATGCAAGTTTTGACAGATGTGGTTGGGGTTGAAGGTGTGGTACATCATCACCAGGACTGCTGGCTTATCAACTGTGAAGACAAGCAATTAGAGTTTTATTATAACTTGTGAAATCTAGCCCTGCATTTCTGAGAAAAGGGGAATCTGAATTTTGAGAGTACAAATTAACTTACAATTCCCttgtgaaaaaaacaataaatctctgAACTGAGAGGAACTT

Function

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0031314 extrinsic component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0043531 ADP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-487 Predicted to enable ADP binding activity and kinase activity. Predicted to be involved in phosphorylation and ubiquinone biosynthetic process. Predicted to be located in mitochondrion. Predicted to be extrinsic component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 4. Orthologous to human COQ8A (coenzyme Q8A).

Ensembl:

ensembl_id ENSDART00000020153

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036643 lncRNA upstream 10837 38373672 ~ 38447247 (+) True XLOC_017530
TCONS_00036641 lncRNA upstream 319661 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00036642 lncRNA upstream 319661 38130452 ~ 38138423 (+) False XLOC_017524
TCONS_00036406 lncRNA upstream 321343 38131736 ~ 38136741 (+) True XLOC_017524
TCONS_00034820 lncRNA upstream 573278 37866623 ~ 37884806 (+) False XLOC_017522
TCONS_00036644 lncRNA downstream 71386 38590508 ~ 38598879 (+) True XLOC_017534
TCONS_00036645 lncRNA downstream 528937 39048059 ~ 39053466 (+) False XLOC_017541
TCONS_00036646 lncRNA downstream 528949 39048071 ~ 39059365 (+) False XLOC_017541
TCONS_00034856 lncRNA downstream 528992 39048114 ~ 39052699 (+) False XLOC_017541
TCONS_00034857 lncRNA downstream 530052 39049174 ~ 39195117 (+) False XLOC_017541
TCONS_00034834 mRNA upstream 98751 38322444 ~ 38359333 (+) False XLOC_017529
TCONS_00034833 mRNA upstream 98764 38322444 ~ 38359320 (+) False XLOC_017529
TCONS_00034835 mRNA upstream 105450 38322459 ~ 38352634 (+) False XLOC_017529
TCONS_00034836 mRNA upstream 105998 38322484 ~ 38352086 (+) True XLOC_017529
TCONS_00034828 mRNA upstream 166132 38257818 ~ 38291952 (+) False XLOC_017526
TCONS_00034839 mRNA downstream 5705 38524827 ~ 38529780 (+) False XLOC_017532
TCONS_00034840 mRNA downstream 6445 38525567 ~ 38538994 (+) True XLOC_017532
TCONS_00034841 mRNA downstream 24192 38543314 ~ 38545818 (+) False XLOC_017533
TCONS_00034842 mRNA downstream 24197 38543319 ~ 38584161 (+) False XLOC_017533
TCONS_00034843 mRNA downstream 24224 38543346 ~ 38583696 (+) False XLOC_017533
TCONS_00034825 other upstream 338194 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034815 other upstream 631948 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034779 other upstream 2177920 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 3035257 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 3075467 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034845 other downstream 101544 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 101612 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 255850 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034855 other downstream 391119 38910241 ~ 39046180 (+) True XLOC_017540
TCONS_00034862 other downstream 812847 39331969 ~ 39332092 (+) True XLOC_017544

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_01616562_01644867.mRNA True 2012 mRNA 0.51 14 CI01000029 1616435 ~ 1644880 (+)