RNA id: TCONS_00034843


Basic Information

Item Value
RNA id TCONS_00034843
length 2692
RNA type mRNA
GC content 0.48
exon number 18
gene id XLOC_017533
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38543314 ~ 38584161 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAGGAGAGCAATACAACATGGCGGCGATTCCACGCTGATGTGTCAAAAATGCTTTAGCCGAGGAGTTTCACAGGAAAAGCGGCATATTTTCGATCAGCACTACAATCAGAAGAGTATTCATTTAACCCGAGATCAGACACAGTACATCTGACCGAGGCAGTGCTGGGATCAATTCTGTGAAAGAACTGGTGTTTTAATGGCAGCTGGTGCCCTGAATTTGGGCAAACTGATGGGTGAAAAAATGGGTTTGCCATGTGAAAAAGACACAGATGACCGACCAGGACATTTCAACCATGAGGGTAAAGAAGAGAGTGAGGATTCAAAGCCTAAGAAaataaaggcagacacacaactgTCTGaACAGGCACCTTGCTCCCAGGTTTCTTCAGGTGTGGACCAGGAGAACTCATTTAATGTAGAGCAAACCAAAAAGAATGAAGAACTGAAAGCAAAGACCCCTGCTAAGAGAAGAAAAAAGGAGATCATTCCTCAGACTACACCACAACAAGATGTTCCAGCTCTTACTGATACTTCTGAACTCGCGTCTAGCGGTCGACCCAAGCGGAGAGCTGCTAAAGTCGCTTTAGATTATCTTCACAGCCTTGCCAAGGATATTGGTACTCCATCAGAATCCTCAACACCAGCTAGGCCCAAATCTGGAGAAGCCGTTGTCACTTCCCAAAAAAAGAAACCAGCAAGGTCAAGGGGAGTGAAAAGGAAAGCTCCAGATTCTGACAGTGACTGTGATGGTGATGAGGATTTTGCCCCAGAAAAGGATGATGTAGAGGCAGAGAGCGATGAAGAGGATTCAGAGGATTCAGAGCCAGATGTCAGCTTGACCATGCCTCGCCGAGGCAAACAAGCCAGAGGAAGTTATCAATGTTTGCTTCCAAATGGCTTGGCTAACAATGTCATGGAACCTGTCTGGAACTCTTTCAGTAGGCACAAAAACCGGGACGAAAACTTCTCCCCATGGGTGTTTCCAGAGTGGATTCCTTCTGCTAGAGATTGGCATTTTCTATCTAACAGTGAGGCTGAGAAATATTTACCCCAGGAGAAGGAATCTGCTTCTTTTACCTTTACACGAGaaaaaatcaaccaaccaattcaACTGCAGACAGTGAAAAGGTTTGAGTCATTGCCACATCATCCTGAGCGATGGGACTCTCTGTTCTTTGTGGGAGGTCCTGTTCGGGCCATGGAATGGTGCCCGTGTCCAGACGGGGCTGAGAAAAAACAATATGCTGCCATCTACTGCCATAAAGGCATGGACGACACACACCAAATCACCAAGCTGTACTCGGGTCCTGCCTTACTGCAGCTGTGGGACCTAGGAGACCTCCAGTGCAAAGAAAGGCCCTCAACTACTCCTCATCTAGCATATGCTCTGGCGATAGATGACGGATACATCTGGAATATCAAGTGGTGTCCTGCTGGAGCATGGGAACTGCCTTCTACCAGCAGAAAGgctCCACAGATGCCTAGATTAGGTGTTCTAGCTGCAACCTTTGCTAATGGAACGATCGGTGTCTACAGTCTTCCGCACCCAGAAGCCCTTGAAAAACACTATCAAAGTAAAGATCAGCACTTTATGGGCTGTTTTATGCTGTTTCTGCAGGTGAAGAAGCTTCTGTCTCTGAAGATGGGCTCCAATCAAGCCGACCATAAAGCTCAAAgTCTGGTTGGTTTGTGGGATCTCTCCAGCAAGTCTACGCTGCTAAGGGTCAGGTGTCCTGATGGAGGTGTTTCTCTGTACCCTTACCACTGTTTTCATGCCCACGATGAAAACATCCGAACCTTGAGCTGGTGCAAAGCCTCAAGTCACTTGTTGGTGACCGTCGGGGATGACCGCATGGCTAAAATGTGGGATGTCAGGAAAACCCACACGCCTCTTTTGGCAGTTAAGCGCTGCTTGTCTCCTGAAGTTTACTGGCCCCTCTTATGGAGTGGCTTCTTGATGGCTCAAGAGTGCTGCTTTGCGACgTATGGACAACACGGCATTCACTACTTTGATTCTGGTTACCTTGGAATTAAGCCTTTTTTTGTGTGTCCAAGAAAAGCCACTATTTGGAGCCTTTCTATGTCCGATTGGATAAATGCATTTGCCATTGTGGATAATGGAGGAGACTGTTTATTTAGTTGTCTTCCTGAAATGGACATGGACCCCAGTAATCTCCGACGACGGAGATTTTCCGTGTACAGGACTGACATGGTCCAGTTTGAAGCTGGTCAGAGGACAGCAGGTGAGGAACAGGCGGAGGAAGAAACTGAAGACAAGACCAGTATTCCTGGAAGAGAGCCATTGACCTACAGAGGAGCAGtcaaaaaaaactttctccactTTCATGACTTGGACATGGGGAACTTTTCTAAGTGTGAAAATCGGCCCATGATGAAGCACCTACAACAACACGAGCTCAAAGGTGCTGCTAAAGTGGACCAGATGCCACTGAGTGCCCTCTACAAGGTTCGTTTTAACCCGAACATGGATGCGTACAACTGGTTGTTGTCAGGCGGTCAGTCAGGATTGGTGCGAGTGAATTGTGCTCGTGGACTGAGCTGCTCTATCATGATGAAGGAGCTTCGTGAAGCTCAAGCCCAGTTCAGCGCCATGTTCCAGTCTCGGGAGCCTGATGACTCGGTGACAGCTGTCCGTCACAGCACAGCGGACACAGTACAAGTGCACTAG

Function

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0000127 transcription factor TFIIIC complex cellular_component

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-041014-349 Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C2 (general transcription factor IIIC subunit 2).

Ensembl:

ensembl_id ENSDART00000101262

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036643 lncRNA upstream 96099 38373672 ~ 38447247 (+) True XLOC_017530
TCONS_00036641 lncRNA upstream 404923 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00036642 lncRNA upstream 404923 38130452 ~ 38138423 (+) False XLOC_017524
TCONS_00036406 lncRNA upstream 406605 38131736 ~ 38136741 (+) True XLOC_017524
TCONS_00034820 lncRNA upstream 658540 37866623 ~ 37884806 (+) False XLOC_017522
TCONS_00036644 lncRNA downstream 6812 38590508 ~ 38598879 (+) True XLOC_017534
TCONS_00036645 lncRNA downstream 464363 39048059 ~ 39053466 (+) False XLOC_017541
TCONS_00036646 lncRNA downstream 464375 39048071 ~ 39059365 (+) False XLOC_017541
TCONS_00034856 lncRNA downstream 464418 39048114 ~ 39052699 (+) False XLOC_017541
TCONS_00034857 lncRNA downstream 465478 39049174 ~ 39195117 (+) False XLOC_017541
TCONS_00034840 mRNA upstream 4352 38525567 ~ 38538994 (+) True XLOC_017532
TCONS_00034839 mRNA upstream 13566 38524827 ~ 38529780 (+) False XLOC_017532
TCONS_00034838 mRNA upstream 24220 38458084 ~ 38519126 (+) True XLOC_017531
TCONS_00034837 mRNA upstream 24224 38458084 ~ 38519122 (+) False XLOC_017531
TCONS_00034836 mRNA upstream 191260 38322484 ~ 38352086 (+) True XLOC_017529
TCONS_00034846 mRNA downstream 36985 38620681 ~ 38670696 (+) False XLOC_017535
TCONS_00034848 mRNA downstream 88198 38671894 ~ 38716529 (+) True XLOC_017536
TCONS_00034849 mRNA downstream 140879 38724575 ~ 38727396 (+) False XLOC_017537
TCONS_00034850 mRNA downstream 140883 38724579 ~ 38726062 (+) False XLOC_017537
TCONS_00034851 mRNA downstream 141966 38725662 ~ 38726083 (+) True XLOC_017537
TCONS_00034825 other upstream 423456 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034815 other upstream 717210 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034779 other upstream 2263182 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 3120519 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 3160729 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034845 other downstream 36970 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 37038 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 191276 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034855 other downstream 326545 38910241 ~ 39046180 (+) True XLOC_017540
TCONS_00034862 other downstream 748273 39331969 ~ 39332092 (+) True XLOC_017544

Expression Profile

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