RNA id: TCONS_00034840


Basic Information

Item Value
RNA id TCONS_00034840
length 2506
RNA type mRNA
GC content 0.43
exon number 16
gene id XLOC_017532
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38524827 ~ 38538994 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGTGATCTCTCCGAACGGACGGTAATGTTGAAGCTACTCTTGTTTTGTGAGCGGATCATTGATCAGACCCAGAGAAATGTCTGGCAAATGTGAACCCAGCAAGAGGAAAATGGCTAGACCAAAACTAAACCCCGAAACAACAGAGTCAGCTTCCTCTTCAACAGATGTGGTAAAGGATTTAAGAAGAGAGGCTAAAGAAAGTGGAACGAGACCCTCCAAAAATATGGGAACAAGCTctcaaaaaacaaagaaaacatacCCCCGAAAAAGGTATCATGATCTCCAGCCTGTGATTATGAGACCTACAGAGGATTCAGACCATGGGTTGTCCTGCAGTTCTGTTACCACTTCCAGCCTGGCCAATGGCTTGGAGAGccaaaatatgcaaatattccACACAGAGGGAATAATAGGAAAAAGTGATGGATCCAGTTCAGACACATTTACTGAAAGAGATTTTAGAATGAAAAAGAAGCAGAAGATGGAGGAAACCGACTGTTCCTCCTTGAAAAAGTACATCGAGCAAGTAAAGCAAACAGTACCTGTTATAGTTCCTGTTGCTCAGTTCTCGCAGAAGACTCAAAGGACTGAGGAGCAGAAATCAGCTCAGCACAACAAGAAAGAGACCCATGTTTATCCACCAGGAAGTCAGGAGGAGAAATGGCAGCTGCAGATTTTGGCAAAGGGTAGAGTAACCTGCCCAAAATGCAAAAGTGTTGGAAGAAAGACAGTGGATGGGTTAAAGAAACACCTGGAAACATGCAAACTGAACCCTTTTACATGTCCACATTGTGAGAAACAACTGAAAACTTCAACTGGAATGAAGTACCACCTCATGGCTGACCACAACAGCTTGcccATTCCAGACACTGGCAATGAACTAGTTGACCAGGAAGTGAAGGAAAAACTACGCAAAGTATTAAAAAGAATGGGCAAATTAAAGTGCTCCAGAGAGGGCTGCACTGGAAGTTTCACTAGTATAATGGGTTATGTATACCATATGAAGAAATGTGGCAAAGAGTCGTCCGAGCTGGAGAAACTTTTATTGAATTGTAAACACTGTGGAAAAGCATATCGTTCCAGAGCGGGCCTGGAGTATCATCTCAAAAATGAACACAGTCCAGTAGCTGAGGAAAGTGAGGAGGTAAAACCCCAGAAAGAGCCGGTGCCAGAACGGACACAGAGCGGACGGGCCAAACGTTTGTCGGCGCAGGTCGCCGGGTTTTACCTGAGAGAAATCGCCAGCGAGGAGCTGCTAAAGGAATGGCCCAAAAGAAAAGTCCAACGAGACCTGGTGCCAGATGACAGGAAGCTGAAGTATTCTCGTCCAGGGTTGCCTTCCTTCAGCCAGGACACTCTGCGGAAGTGGAAGAATGAAGTCAAACTGCATAAGAAAGTGCAGTGTCCAAACAAGGGTTGTGGATGCTTCTATACCAGTGTATCAGGCCTGAAGGCTCATCTTGGACTGTGTACCTTGGGTGAATTTGAGACTGGGAAgtataaatgtttaatatgtaAGAAAGAATTCAACTCTGAAAGTGGAGTCAAGTACCACATCAATTCCATTCATGCTCAGGACTGGTTTGTTGTTCGGTCCAAGTCTAAGAGCTTAAAGTTTGAAAAACTGGACAAGACTCAAGCAAAGGAAGATTCAGACCTTCCCTCGCCGGACTCAGAAACTCTCAGTTTCCCCCAGGGCTCCAGCAGCACTTGGCAGGACAGACAGACGTCAGCGGTGCCCATCTCAAGTGGCACAGCGACTCAAGaactgaaaatgaagaggaaagaGAGACGAAACCAACAGAAACGGAAAGCAAGCGGACAGGAGAAAGACTGCTATGAATTCAGTGGCAATGAGAGTCAGAGCAGCAGCggcagcagcagctccagctccagCAGTGAGTCTGAACCCGAGACCCACAAACAGGATGAATGGACCCTCAGCAGACCCCTCTCCAGCCAGAGACCCGAAAGTGACCCGTAAAACATTCCTGTTCCGTCATATGTGGAGTTCTCCAAAGATTAAAGAGGTACATTACTGTTCAGAAGTTTTGAgtaaaagggatagttaacccaaaaattaaaatttactcagtatttactcaccctcaagtgcttccctacaaccattgacttcaatagtaagaaaaacaatactatggaagtcaatggtcacagttttcagcatttttctaaatatctgcttttgtaagaatctcataaaggttaattaatgatgacaggattttcatttttgtgtgaaccatccctttaagagaAAAAAGACGTCTCTTTTGCTCACCAAagtttgaatacatttattaataatcaaagcataaatagtaatattgttttacaattttgtaagacatttaatttattcttttaatggtaaatctgattttttttacagtattttctgtgTCATATGATCAtttaatacactcaaaaaatgattgctgtttgttcaaactgcatatttaaaatgagctttggaggggaca

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-346 Predicted to enable metal ion binding activity. Orthologous to human ZNF512 (zinc finger protein 512).

Ensembl:

ensembl_id ENSDART00000147787

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036643 lncRNA upstream 78320 38373672 ~ 38447247 (+) True XLOC_017530
TCONS_00036641 lncRNA upstream 387144 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00036642 lncRNA upstream 387144 38130452 ~ 38138423 (+) False XLOC_017524
TCONS_00036406 lncRNA upstream 388826 38131736 ~ 38136741 (+) True XLOC_017524
TCONS_00034820 lncRNA upstream 640761 37866623 ~ 37884806 (+) False XLOC_017522
TCONS_00036644 lncRNA downstream 51514 38590508 ~ 38598879 (+) True XLOC_017534
TCONS_00036645 lncRNA downstream 509065 39048059 ~ 39053466 (+) False XLOC_017541
TCONS_00036646 lncRNA downstream 509077 39048071 ~ 39059365 (+) False XLOC_017541
TCONS_00034856 lncRNA downstream 509120 39048114 ~ 39052699 (+) False XLOC_017541
TCONS_00034857 lncRNA downstream 510180 39049174 ~ 39195117 (+) False XLOC_017541
TCONS_00034838 mRNA upstream 6441 38458084 ~ 38519126 (+) True XLOC_017531
TCONS_00034837 mRNA upstream 6445 38458084 ~ 38519122 (+) False XLOC_017531
TCONS_00034834 mRNA upstream 166234 38322444 ~ 38359333 (+) False XLOC_017529
TCONS_00034841 mRNA downstream 4320 38543314 ~ 38545818 (+) False XLOC_017533
TCONS_00034842 mRNA downstream 4325 38543319 ~ 38584161 (+) False XLOC_017533
TCONS_00034843 mRNA downstream 4352 38543346 ~ 38583696 (+) False XLOC_017533
TCONS_00034844 mRNA downstream 4548 38543542 ~ 38545818 (+) True XLOC_017533
TCONS_00034846 mRNA downstream 81687 38620681 ~ 38670696 (+) False XLOC_017535
TCONS_00034825 other upstream 405677 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034815 other upstream 699431 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034779 other upstream 2245403 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 3102740 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 3142950 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034845 other downstream 81672 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 81740 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 235978 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034855 other downstream 371247 38910241 ~ 39046180 (+) True XLOC_017540
TCONS_00034862 other downstream 792975 39331969 ~ 39332092 (+) True XLOC_017544

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_01653157_01657944.mRNA True 1869 mRNA 0.44 9 CI01000029 1652840 ~ 1658005 (+)