RNA id: TCONS_00049718


Basic Information

Item Value
RNA id TCONS_00049718
length 1269
RNA type mRNA
GC content 0.52
exon number 10
gene id XLOC_025171
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15550522 ~ 15608166 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACGGTGCGTAAGGGAAAAAAGCTCACCATCTCCATCCAGGAACACATGGCCATAGACGTCTGTCCGGGCCCCATACGACCAATTAGACAGATCTCTGCCTATTTCCCCCGTCTCTCCCCAACCGCTGAGCCCGTCTCTCCGAACCCTGCTTCTCCACTGTCTCTCAGCCCAGGCCTCGGGGCCTCTGGAGGGGCAAGTGGAGGCCTGTTGTCTCCATTGCAGGCTGGAGCGAGAGGAGGAGGTGGGACTCTGTCCGCAGCCAGCAGCATCGAGACATCGGTGGACATCTGCAGTTCAGACAGTGATGACAGCACTGCGCTGGGGACGCTAGAGTTCGAACTGAGGTATGAGAAAGCCACCAGTTCACTCAACTGCACCATCATCAGAGCAAAGggtTTGAAACCCATGGATTTTAATGGCCTGGCTGACCCTTATGTCAAACTTCATCTTCTACCAGGAGCATGCAAGGCCAATAAACTGAAAACCAAAACAGTACGTAATTCTCTAAATCCTGTTTGGAATGAGACGCTCACTTACGTTGGCATCACAGAGGAGGATATGCACAGGAAGACTCTGAGATTATCGGTGTGCGATGAAGATAAACTGACTCATAATGAGTTTATTGGAGAGTCCAGAGTGGCCCTACGACGTGTGAAACCGGACCAGACCAAACGTTTCTACACCTGTCTAGAACATCCACCACCTCTTCCCTCTCCAACAGCAATGGGAGCAGCGCTGCGAGGGATCTCCTGTTACCTACGAGAGTGGGAGAATGAACAAATGACGAGTTTGGAAGAGAGGGGTCGTTTGCTGCTTTCGCTGCAGTTCCTTCCCCCACCTGCAGAGGGTGAAGGAGAGTCCCGGCGAGGGGGATTATGTGTCGGAGTGCTGCGCTGCGCTCATCTGGCTGCCATGGATGTAAATGGCTTCTCAGATCCCTATGTGAAAATATACCTGAAGCCAGATGTGAAGAAGAAATCCAAACACAAAACGTCAGTGATTAAAAAGACCCTCAACCCAGAATTCAACGAGGAGTTTTTCTATGAGATCTCTCTATCTGAGCTGGTTCATAAGACGCTGGAGGTCACAGTATGGGACTATGATCTGGGAAGATCTAACGATTTCATAGGTGGCGTGTGCCTGAGCTGTCACGTCCAGGGAGATGCCCTTCGCCACTGGATGGACTGCCTGAGGAACAAGGGTCAAAGGGTGGAGCGCTGGCACATTCTGGCCAATGAGCTGCCTCAGACCACCTGCCACGACTGA

Function

GO:

id name namespace
GO:0035264 multicellular organism growth biological_process
GO:0007420 brain development biological_process

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090706-1 Predicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Acts upstream of or within brain development. Is expressed in brain; female organism; and head. Orthologous to human DOC2A (double C2 domain alpha).

Ensembl:

ensembl_id ENSDART00000176218

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052332 lncRNA upstream 32645 15517552 ~ 15517899 (+) True XLOC_025170
TCONS_00049715 lncRNA upstream 44387 15505184 ~ 15506157 (+) False XLOC_025169
TCONS_00049716 lncRNA upstream 44387 15505277 ~ 15506157 (+) True XLOC_025169
TCONS_00052624 lncRNA upstream 278251 15271946 ~ 15272293 (+) False XLOC_025165
TCONS_00052623 lncRNA upstream 318706 15229952 ~ 15231838 (+) True XLOC_025164
TCONS_00052625 lncRNA downstream 10245 15618278 ~ 15621754 (+) True XLOC_025172
TCONS_00052626 lncRNA downstream 31419 15639452 ~ 15646667 (+) True XLOC_025173
TCONS_00052627 lncRNA downstream 77329 15685362 ~ 15692587 (+) False XLOC_025174
TCONS_00052628 lncRNA downstream 77461 15685494 ~ 15692587 (+) False XLOC_025174
TCONS_00052629 lncRNA downstream 77722 15685755 ~ 15692587 (+) False XLOC_025174
TCONS_00049714 mRNA upstream 124855 15394428 ~ 15425689 (+) True XLOC_025168
TCONS_00049711 mRNA upstream 158078 15358459 ~ 15392466 (+) False XLOC_025167
TCONS_00049713 mRNA upstream 158100 15360879 ~ 15392444 (+) True XLOC_025167
TCONS_00049712 mRNA upstream 189166 15358625 ~ 15361378 (+) False XLOC_025167
TCONS_00049710 mRNA upstream 233152 15296824 ~ 15317392 (+) True XLOC_025166
TCONS_00049720 mRNA downstream 128778 15736811 ~ 15746999 (+) True XLOC_025175
TCONS_00049722 mRNA downstream 165958 15773991 ~ 15795396 (+) False XLOC_025176
TCONS_00049723 mRNA downstream 168413 15776446 ~ 15795110 (+) True XLOC_025176
TCONS_00049724 mRNA downstream 197884 15805917 ~ 15811037 (+) False XLOC_025177
TCONS_00049725 mRNA downstream 201065 15809098 ~ 15809943 (+) True XLOC_025177
TCONS_00049704 other upstream 865941 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049690 other upstream 1150892 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049684 other upstream 1305760 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049675 other upstream 1692828 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049661 other upstream 2144006 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049719 other downstream 83270 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049721 other downstream 147690 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049736 other downstream 764979 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049741 other downstream 961232 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049746 other downstream 1060570 16668603 ~ 16678650 (+) False XLOC_025192

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000035_00110757_00131789.mRNA True 1279 mRNA 0.49 10 CI01000035 110757 ~ 131840 (+)