RNA id: TU2376206


Basic Information

Item Value
RNA id TU2376206
length 215
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2078295
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35931812 ~ 35932026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accaagacttcacaaaatgggacaaacaccaaattgagactctgcacgcagaattctgcaaaaatatcctccgtgtacaacgtagaacatcaaataatgcatgcagagcagaattaggccgatacccactaattatcaaaatccagaaaagagccgttaaattctacaaccacctaaaaggaagtgattcacaaaccttccataacaaagccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2376205 lncRNA upstream 126 35931479 ~ 35931686 (+) True G2078294
TU2376201 lncRNA upstream 4374 35927098 ~ 35927438 (+) True G2078290
TU2376162 lncRNA upstream 55173 35874420 ~ 35876639 (+) True G2078255
TU2376157 lncRNA upstream 63009 35866876 ~ 35868803 (+) True G2078251
TU2376140 lncRNA upstream 80977 35845139 ~ 35850835 (+) False G2078240
TU2376242 lncRNA downstream 31168 35963194 ~ 35963483 (+) True G2078331
TU2376260 lncRNA downstream 59337 35991363 ~ 35991577 (+) True G2078346
TU2376261 lncRNA downstream 60143 35992169 ~ 35992463 (+) True G2078347
TU2376265 lncRNA downstream 66027 35998053 ~ 35998391 (+) True G2078351
TU2376343 lncRNA downstream 141979 36074005 ~ 36074690 (+) True G2078416
XM_021588404.2 mRNA upstream 108928 35804534 ~ 35822884 (+) True LOC110507976
XM_036965549.1 mRNA upstream 412703 35465699 ~ 35519109 (+) False LOC110507975
XM_021588401.2 mRNA upstream 767353 35156006 ~ 35164459 (+) True LOC110507973
XM_036965275.1 mRNA upstream 820770 35014631 ~ 35111042 (+) False gucy1a2
XM_036965014.1 mRNA upstream 922008 34970520 ~ 35009804 (+) True cwf19l2
XM_036965202.1 mRNA downstream 73399 36005425 ~ 36012334 (+) False LOC110507977
XM_036965203.1 mRNA downstream 74007 36006033 ~ 36012334 (+) False LOC110507977
XM_036965204.1 mRNA downstream 74569 36006595 ~ 36012334 (+) True LOC110507977
XM_036965269.1 mRNA downstream 433629 36365655 ~ 36381011 (+) False naalad2
XM_036965270.1 mRNA downstream 433629 36365655 ~ 36381011 (+) False naalad2
TU2376159 other upstream 60079 35870485 ~ 35871733 (+) True G2078253
TU2376088 other upstream 133822 35797572 ~ 35797990 (+) True G2078188
TU2375966 other upstream 238979 35684135 ~ 35692833 (+) True G2078087
TU2375601 other upstream 418299 35470330 ~ 35513513 (+) True G2077777
TU2375598 other upstream 423838 35465990 ~ 35507974 (+) True LOC110507975
TU2376207 other downstream 89 35932115 ~ 35932509 (+) True G2078296
TU2376308 other downstream 101259 36033285 ~ 36033999 (+) True G2078382
TU2376352 other downstream 170848 36102874 ~ 36104101 (+) True G2078425
TU2376423 other downstream 368912 36300938 ~ 36302042 (+) False G2078493
TU2376424 other downstream 368912 36300938 ~ 36302042 (+) False G2078493

Expression Profile