RNA id: TU2376343


Basic Information

Item Value
RNA id TU2376343
length 686
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2078416
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36074005 ~ 36074690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtactgtgttacagACTCTGTGGTAAAGCCTTCTAAATGTGATTGGTTCAATGTGGGAAACATGGGAGTTGTAGTCAGGGAAAAAGAGacgagagagtgaaacagagatgcaGGGGAAGAggtgatggatagagggagagataaataAAGAGAGACTGAAGGACGGATGTATGGGGTGAATCGTTTAACAGAAGTACCTGCGGAGTGTGTCTTCGTTAGCTCTGTCTCCATGGTTACGGAGACGGCAACAAGGCTCTGAGTCGCCATGAGGGTGACCTTGTCTCTGATAAAATCCCAAAGGCACAaataaacacaaaaacacacacacaaaccacaggaggctgttgaggggaggatggctggaatggaatggtatcaaacacatgaaaaccattccatttattttgttaCAGCCATTACTAAGAGCCAGTCGTCCCCAATACagctgccaccaacctcctgtgacacatACACACTATCTGCACTTTAGAGACTATTTTCAACTCAGTGACTCAGGCACCTTAGTctctgaggtggtggtggtggagtgtGTACTGATGGTggtgttgtgatggtggtggtgtgtagtgatggtggtgtgtagtgtgtactgatGGTGGTGTGTACTGATGGTggtgtgtagtggtggtggtggtgtgtgtagtgatgttggtgtgtgtagtga

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2376265 lncRNA upstream 75614 35998053 ~ 35998391 (+) True G2078351
TU2376261 lncRNA upstream 81542 35992169 ~ 35992463 (+) True G2078347
TU2376260 lncRNA upstream 82428 35991363 ~ 35991577 (+) True G2078346
TU2376242 lncRNA upstream 110522 35963194 ~ 35963483 (+) True G2078331
TU2376206 lncRNA upstream 141979 35931812 ~ 35932026 (+) True G2078295
TU2376346 lncRNA downstream 2783 36077473 ~ 36077693 (+) True G2078419
TU2376347 lncRNA downstream 3556 36078246 ~ 36078521 (+) True G2078420
TU2376350 lncRNA downstream 25674 36100364 ~ 36100648 (+) True G2078423
TU2376353 lncRNA downstream 31854 36106544 ~ 36106845 (+) True G2078426
TU2376354 lncRNA downstream 32476 36107166 ~ 36107986 (+) True G2078427
XM_036965202.1 mRNA upstream 61671 36005425 ~ 36012334 (+) False LOC110507977
XM_036965203.1 mRNA upstream 61671 36006033 ~ 36012334 (+) False LOC110507977
XM_036965204.1 mRNA upstream 61671 36006595 ~ 36012334 (+) True LOC110507977
XM_021588404.2 mRNA upstream 251121 35804534 ~ 35822884 (+) True LOC110507976
XM_036965549.1 mRNA upstream 554896 35465699 ~ 35519109 (+) False LOC110507975
XM_036965269.1 mRNA downstream 290965 36365655 ~ 36381011 (+) False naalad2
XM_036965270.1 mRNA downstream 290965 36365655 ~ 36381011 (+) False naalad2
XM_036965271.1 mRNA downstream 290965 36365655 ~ 36381011 (+) True naalad2
XM_021588445.2 mRNA downstream 363535 36438225 ~ 36440709 (+) False LOC110508005
XM_036965056.1 mRNA downstream 379071 36453761 ~ 36546497 (+) False LOC110507218
TU2376308 other upstream 40006 36033285 ~ 36033999 (+) True G2078382
TU2376207 other upstream 141496 35932115 ~ 35932509 (+) True G2078296
TU2376159 other upstream 202272 35870485 ~ 35871733 (+) True G2078253
TU2376088 other upstream 276015 35797572 ~ 35797990 (+) True G2078188
TU2375966 other upstream 381172 35684135 ~ 35692833 (+) True G2078087
TU2376352 other downstream 28184 36102874 ~ 36104101 (+) True G2078425
TU2376423 other downstream 226248 36300938 ~ 36302042 (+) False G2078493
TU2376424 other downstream 226248 36300938 ~ 36302042 (+) False G2078493
TU2376426 other downstream 226248 36300938 ~ 36302042 (+) False G2078493
TU2376427 other downstream 226248 36300938 ~ 36302042 (+) True G2078493

Expression Profile