RNA id: TCONS_00073114


Basic Information

Item Value
RNA id TCONS_00073114
length 1810
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_037141
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 24065855 ~ 24115589 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATGATTAAAAATAGTGGAGGGGGTGTGCGAGCCCTGAAACTCCCCCAACAGACGCTCGAGTCCATCTGTGCACCAACAGTGAACTAAAGCGAGAGAAGAAAACTTTTAACCCAGCAGTTACACTAACACTGCATAAATACCAAACTCTGTGCAAACAAACTTTAACTGTTAGACCATTTACAGCCATTTTGGCAACTTCTCGGTGGCGACACGTGTGTCATGAAAACGCGTTTGCGCTCTCAGTAACGGTGACTCTTGTCTTTCACAGTACAGCAGTAGGAAGAGTGCAGAAAAGACGGATGTAACACAATGAACCGCGTCGCGAACGACACGACGTAGCCTCGCCGTTTTTGTCTAGAGTTGAAAACGCGCTTTCTTTTTCTTATGCCTTTGCTGAAGGAATAACTCAAGTGTCGGTTCTCACGGGCGAACAGCGTGTGTTTCTCAGAAGGATTTTAAAGGTTACTAATGGGGTCTCAAGGGCCAGGACGGAAAAGAACCCCCAGCAAAAATGGGTTGACTGCAGAGGAAGATGCCCTCAACGTAATCGCAAAAGAGGCTGAAGCCCGTTTGGCAGCGAAGAGAGCGGCCCGTGCAGAAGCTCGTGAGATCAGAATGAAAGAACTGGAGCGACAGCAGAAAGAGGTGTCAGATGATGAAGAACGGATGTCAGTGGGGAGCAGAAGCAACGTACGGgCTGATGACAGGTTAGAGCGTGACTACTTGGAAAAGGGCTCCTCACGAGCATCAACCATATCTGGCACCACCCTCACCTCTCTGGGTGGGACGTCCTCACGGAGAGGGAGTGGAGATACGTCCATCTCTGCCGACACAGAAGCCTCCATACGGGAAATCAAGGATTCCCTATTGGAGGTTGAGGAGAAGTACCGTAAGGCCATGGTGTCCAATGCACAGCTGGACAATGAGAAGACCAACATGATGTATGAAGTGGACACTTTAAGAGACTCTTTAATGGAACTGGAGGAGATGCTCTTTGAAACTCGGCGTGAGCTGGAGGAAAAGATTAAGGATCTTGAAAGAGAGAAGCATGCTCATAGTATACTGCAGTTTCAGTTCAGTGAATTGAAGGAGACGCTGAAACAGAGTGAAGAACTGCTGTCTAAACATGGCATTGTCCTTGGACCTGATTTAGTCACCAATGGAGAAACGGGGGATGAAGTTGGAAATGCTGATCCGAATTCTCAAACAGCCTCAGCTGAAATTCGAGAGGGAAGTAGTGTACTAGGCATTCATCAGTTGAAGCATAAAGACCAGGAACAAAAATATTTGGATGATGAGGTGCAAGGAAATCAGCAGTCTTCAAATGCCCTATTCAGTTCTACTAACCCACCGTTAGAGGCAAATGACAATGGTGTCCTTGGGGACTCTGTGGTTCCAGGTGTAGGGCAGCATGAAAATAGAACTGAAGAACCTTTAAGTTCTGTTGGTGATGAAGAAGTCACCGCTACAGCACCCAAGGAGGAGGTCAAATCTGAGGAGCATGAACTGAAAGATTTGAAAAATAATGCTGTGGAATTGAAGCGCAAAGTTTGTATGGGTGAACATTTGGAGACCGAGCAACAAGAAAGCAAATGCGTCAACTCAAGTCAGGAAATCAAAGAGGAAGCTCCTTTAGATTCTGTCTCTAATACAATGCATGATGAAACTGATAAACCTGATGAGGCAGTACTTGATGAACAATGCAAAGAGGAGCCTGTGGAGTCATCTCAAATGGAGGAACCTCCTAAAACTCAAGTTACCAGTGCttcaaataaaaagaagaaaaagaagaagaagaacaagcaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-99 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Is expressed in adaxial cell; cardiovascular system; musculature system; retina; and somite. Orthologous to human LRRFIP1 (LRR binding FLII interacting protein 1).

Ensembl:

ensembl_id ENSDART00000023196

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073107 lncRNA upstream 42563 24020513 ~ 24023369 (+) True XLOC_037139
TCONS_00073102 lncRNA upstream 161516 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00075109 lncRNA upstream 178651 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00073122 lncRNA downstream 12627 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00073129 lncRNA downstream 84560 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073131 lncRNA downstream 101162 24209641 ~ 24212884 (+) False XLOC_037146
TCONS_00073133 lncRNA downstream 101186 24209665 ~ 24212884 (+) False XLOC_037146
TCONS_00075112 lncRNA downstream 970684 25079163 ~ 25080132 (+) False XLOC_037153
TCONS_00073108 mRNA upstream 40528 24025027 ~ 24025404 (+) True XLOC_037140
TCONS_00073106 mRNA upstream 42563 24009013 ~ 24023369 (+) False XLOC_037139
TCONS_00073105 mRNA upstream 42579 24008879 ~ 24023353 (+) False XLOC_037139
TCONS_00073104 mRNA upstream 44770 24008879 ~ 24021162 (+) False XLOC_037139
TCONS_00073103 mRNA upstream 163717 23900703 ~ 23902215 (+) True XLOC_037138
TCONS_00073121 mRNA downstream 12557 24121036 ~ 24123931 (+) False XLOC_037142
TCONS_00073123 mRNA downstream 16966 24125445 ~ 24145650 (+) False XLOC_037143
TCONS_00073124 mRNA downstream 17744 24126223 ~ 24145714 (+) True XLOC_037143
TCONS_00073126 mRNA downstream 50801 24159280 ~ 24192145 (+) False XLOC_037144
TCONS_00073125 mRNA downstream 50801 24159280 ~ 24192145 (+) False XLOC_037144
TCONS_00073100 other upstream 179195 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073090 other upstream 365476 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 509955 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 698723 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 1019547 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073134 other downstream 275655 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 315313 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 958182 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073140 other downstream 965060 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073141 other downstream 970730 25079209 ~ 25080305 (+) True XLOC_037153

Expression Profile

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