RNA id: TCONS_00007492


Basic Information

Item Value
RNA id TCONS_00007492
length 2032
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_003913
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7981243 ~ 8126263 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAAATTAGAAGGCTTTCATTCAAAAGCCAAAGCATTAAGTGAAATGCTAAAATAAAGAGCATATATACAACTGTCAAAAAGAAGTATTtacgaaaagaaaaagaaaatagaacGAGGACGGCGACAGCAtcgcagacagaaagacagaaagcCTCTGTTTAGaCTCCTTGTCTGCCTGCCCATCTGTGGTCCTGTGGAGAAGCCCTGACCTCTTTCCTTATAGATATACAGTCCACAACCTGACTTCACTCTGTCCCCTGCCTCATGGTCTAAGTGGACAGATGATCCTGCCGCCTCTTAACATTGTTGCCACAAAGACAGTCAGAAGGAAGTAGACTTGGTGCCAAACTGTGTCTTAGAAGCCTCTGAGGCTGGGAAGCGAGAGGTCAGGAGTTTGAGATATGCCCTCACCCCCCAATGATGGAGACAATCAAAGAACATCCCCCATGAAAATGTCACCAGCTCTAACCAATCAGAATGGCGTAAAGAGGAAAGTGCGcaccaagaagaagaagaagaagggatTCATCACAGCCAATGTTATAGGAACAAAATATGAGATTGttcGTATCGTCATTGAGGAGCTGACCTTTCATAAAGCCAGAGATGATGACGAGACAGCCAATCTCATCTGGAATGACTCTGCCGTGCAACATGAGAAAATCGCTGAGCTCAGGAACTATCAGAGGATAAACCATTTCCCAGGAATGGGTGAGATCTGTCGGAAAGACTGCTTGGCAAGGAACATGGCCAAAATGATTAAAAGTCAGCCTCAGGAATATAGCTTCATCCCCAAAACCTGGATCTTCCCAGCTGAGTGCACACAGTTCCAAAACTACGTGAAGGAGCTGAAACGAAAAGGCAAGCAGAAAACTTTCATCGTTAAGCCAGCAAATGGAGCCATGGGCCATGGGATATCTCTGATTCGAAACTGTGAAAAGCTCCCGGTCCAGGATCACTTCATTGTGCAGGAATATTTAGACAAGCCCTTTCTTATGGAGGGCTACAAATTTGACCTGAGATTCTACATTCTTGTCACTTCCTGTGATCCACTACGTGTCTTCCTTTACAACGATGGCCTGGTGCGAATGGGCACAGAAAAGTATCACACGCCAAATGAGTCAAACTTGAACCAGCTATACATGCACTTGACCAACTATTCCGTGAACAAACACAATGAAAACTTTGAGCGTGATGAAACTGTGGACAAAGGCAGCAAACGGTCAATTGGCTGGTTCACCGAGTTCCTTCGGATTAATGATTATGATGTGGCCAAATTCTGGGGAGATGTATCGgAGCTGGTGGTGAAGACCCTGTTAGTGGCTGAGCCGCATGTGCTCCACGCTTATCGCATGTGCCGTCCTGGTCAGCCACCAGGGAGCGCCAGTGTCTGCTTTGAGGTGTTGGGTTTTGACATAATCCTCGACCGCAAGCTCAAGCCCTGGCTCTTAGAGATCAATCGTGCACCGAGTTTTGGGACAGATCAAAAGATTGATTACGACGTGAAGAAGGGGGCTTTACTTAATGCCCTGAAACTGCTCAACATCAGAGCGAGTGATAAACGGCGGAATCTGGCTCAGCAGAAGGCAGAAGCCCAGCGCCGACTGTACGGACAGGGATCCATGCGGAAACTGACTGCCGGGTCTTCAGAATGGGAGAAACAACGCCACTTGCTAGAACGCAGAAGGGAGGAACTGAAAGAAAGACTGGCTCAAGTCCGCAAGCAAGTCTCCAGGGACGAGCACGAAAAGCGGCACCTGGGGAACTACAGACGTATTTACCCCCCAGATGACAAGCTGCTCTTGGAGAAATATGAGAGTCTCCTTTCAGCTGCCTTTCAGACATTCCTCGCTGGGCGAGCAGCTTCACTTCAAAAGGAAATGAATAATCCACTGAAACGAATGAAGGCATGTACCTGAGACGCAACCCAACAATCTTTTGCTCTTTTTCCCCTCTTTCTCTCCCCTTTACTACAACTGCTTCCTACTATTTAAtcttttgaatttaaaataagaaatgtgGAAAAGAAA

Function

GO:

id name namespace
GO:0018095 protein polyglutamylation biological_process
GO:0006464 cellular protein modification process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005929 cilium cellular_component
GO:0005524 ATP binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-070112-2112 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL7 (tubulin tyrosine ligase like 7).

Ensembl:

ensembl_id ENSDART00000091617

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007489 lncRNA downstream 250313 7782736 ~ 7796332 (-) False XLOC_003912
TCONS_00008759 lncRNA downstream 250357 7773832 ~ 7796288 (-) False XLOC_003912
TCONS_00008758 lncRNA downstream 250357 7773832 ~ 7796288 (-) False XLOC_003912
TCONS_00008760 lncRNA downstream 259880 7782736 ~ 7786765 (-) False XLOC_003912
TCONS_00008452 lncRNA downstream 261725 7783650 ~ 7784920 (-) True XLOC_003912
TCONS_00007499 lncRNA upstream 75662 8201885 ~ 8204859 (-) True XLOC_003915
TCONS_00007501 lncRNA upstream 95649 8221872 ~ 8223052 (-) False XLOC_003916
TCONS_00007504 lncRNA upstream 113802 8240025 ~ 8241202 (-) True XLOC_003917
TCONS_00007508 lncRNA upstream 140938 8267161 ~ 8268336 (-) True XLOC_003916
TCONS_00007510 lncRNA upstream 158662 8284885 ~ 8285892 (-) True XLOC_003918
TCONS_00007488 mRNA downstream 635209 7404845 ~ 7411436 (-) True XLOC_003911
TCONS_00007487 mRNA downstream 636108 7383177 ~ 7410537 (-) False XLOC_003911
TCONS_00007484 mRNA downstream 665957 7359496 ~ 7380688 (-) False XLOC_003910
TCONS_00007485 mRNA downstream 665971 7359500 ~ 7380674 (-) False XLOC_003910
TCONS_00007483 mRNA downstream 690650 7350926 ~ 7355995 (-) True XLOC_003909
TCONS_00007495 mRNA upstream 34671 8160894 ~ 8168011 (-) False XLOC_003914
TCONS_00007496 mRNA upstream 34689 8160912 ~ 8167872 (-) False XLOC_003914
TCONS_00007497 mRNA upstream 35090 8161313 ~ 8167799 (-) True XLOC_003914
TCONS_00007498 mRNA upstream 75619 8201842 ~ 8208464 (-) False XLOC_003915
TCONS_00007500 mRNA upstream 95612 8221835 ~ 8226088 (-) False XLOC_003916
TCONS_00007477 other downstream 930282 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007463 other downstream 1098627 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 1264569 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 1840056 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 1974579 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007548 other upstream 3199299 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 3204502 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 3212581 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007552 other upstream 3241371 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007553 other upstream 3244232 11370455 ~ 11370653 (-) True XLOC_003943

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_01143391_01218374.mRNA True 2899 mRNA 0.51 20 CI01000058 1143344 ~ 1218374 (-)