RNA id: TCONS_00009185


Basic Information

Item Value
RNA id TCONS_00009185
length 4201
RNA type mRNA
GC content 0.33
exon number 3
gene id XLOC_004641
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18529228 ~ 18571563 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAAAAGACTTAAGCTATCGTAGATGTGATGAATTGTTTGGCTGAGCTGCACTGACACCTACTGGTCTTTCAAGGACAGTTTGTTGAGTAGTTTTGTAAGGGTCACGTGACCGGAAGATTATATCGTCCTTTATTTTCCAGTTTGTATTCATACTCGCTCTGCGCACAAATACGTTGTTTCACTGTAAACCTCTATCAAACTATgtctttttgttcttttttcgGGAAAGAGTTTTATAAAGATCACTTCAAACCTGGTATATATGCTTGTTCCCAATGTGGACATCCGCTGTTTTCAAGTAGATCCAAGTATGAGCATTCCTCCCCCTGGCCTGCCTTCACAGAGACTATTCGAGAGGACAGTGTAACAAAAATGATGGAGACCTTAACAGCCTACAAGGTTCTGTGTGGGAAGTGTGGTAATGGCCTTGGCCACGAGTTCCTGAATGATGGGCCGGAGGAGGGCTTATCACGCTTTTGAATATTCAGTCACTCGCTCAAGTTTGTCCCGAAAGGTacgtcaacaacaacaaaataccaTTATCTAATAGCTTTACATACAGACTTAACCACTTAAATTTTTCATTATCATTTTTCCCCATTAGATAAGGTTGATAAACACTAAGCGAGGAGACTGATGAGGCTGCTGTTGCGCACACTGGCACTGGACGTTCAGCTCATGAAGTGGTCATGGAAAAGCCCTGGAAAGAGGGTCCTGTTCACAGATGTTTTATGACCATCCAGGATGCCACAAAGACAaagaaatctatttttttttactagtctATAAGCTAATtatgaacattaaaaaattaatgaatgaaattaccAGTAATAAAACCTGTCTGAAATATTAGAGTTAATATCTGGAGTTAAtcttcattgttattattattaatatgaagaATAACTTTTCAACAATAATGCAGCATGttgttaatttgattttaaaaatattttaattgtttgttcgGTTGAATTGATCATCCATTGTCTGAATTGTTTGTCAATGAATCCTGCattaatgcttttttgttgtgTGTGCACCATAAAGTCATTGTAATTTAAGTTAGGCTAATATTGAATTGaaattacctttttatttttatttccactATTAAAGAATAATTTGTAACAGTTCTCTTTGGTGCCtttcttttaaatgtatatgCAGTGACCTTTTTATTTAACATTGTGTCAAATAACCCATAaagttacaatttaaaaataaaaaacagcttttttttaagGCAAGTCAGGTTTGATATTGCACCCTATATGATTTTAAATAGTATAAAGTATTAGGCCTTGTTGAAATACTTGAATTTGACCCCTAAATGAGCTCATTTATCCAGTTTTGACTGCATTGCCATTATAGATTTTGAAAATTATAGATAGAAAAAATGCTTTAggacaaattaaatttttatttattcaagtgGCCatattctgactgaggaaagttgaattaATTGGCCAGGTTTTTATTTGAccataggctacagtttttattttaaaacaagttttattagattccttttttattttaatgatggaTGATAACACGTTTGTgtgtaaaaaaatactttttcataTTATCtcatttttaaatgctaatcTCATAACAATATTCATAAAACTATATTCATTTAtagtttaaatttgtaaataaacattttgtggTAAAATAGTAAAGTTAGCACTTCGACAAAACTAGAGaattatttttgttgcatcaaaaaagTGGTTATAATCACTATCCCACAATCCAGCAAAGAGagttcttaaaatgtcactaaaatgcatagTTGAATTGCAACTATGCAAAAGGTctactttttcagaaaaaaacaaacaaacatggccTTTTTCCTGAAAAGTTCTATAAaaagttgtttatatttatttaagaatgttatttaaatgtaaattgctTCTAAAGTCAATTATGCCAGAAAACTATGTgggttaacaaaaaaataaataaacaaataaaacctgACTCCTTAAAACCGCCAAAAAGACGGCGCGCGCGAAAAACGGTCACAGCGTAGATTATTTCATATCCAGCTAGAGGCTCAGCCGGTCACCTCAGCAGCAGTTTCTGGTTTTGTGAGAAGCGAATGAGACTTGTTATCTCGTTATCTGAAGGTTAACAAGTAAGAATTTCACTGCTTTCTAATGAGATATAGGTTACAGATAAAGTAACATTAACctttttttacataaatgtatAGTTTTCTTCAGCGCTTGCTTGTTAGTTTTAAGAGAAATGTAGTAGCTAGCTTGTGATAACGTTAAGCCATTTCCGTTCAGCACGTCTTAATAATATAGCTCCTTGTCTTGtggtcatttatttctgtttttgtgacACTTGTGTTTCAGAGATAAAAAATGACGTACGCTCCAATGGGAAGCTATGTGCCAATTTCTGACCTAAACATAAACATCACACACTCGGTGAGAACCTGCTCTGGCAAATGGCAGAAGACATAAAGTGAATTAAATGGCTTGTTGTGGTGGTATTCtaattttaatgaataattagtcaattgcttaaaatgtttaagttgcCTCTAGTTTAAATAATTAGTGTACTTATTagtataatatactgtatttttcaTACACAGCCACTACATTGTTTTGATTATCATATGACTAGTCAGTATATAAACTTGTGACTATAAGTATATAAACGTGTTTATAAGATGCACATGACACGTttacaaaatatacatatacGGACTTGTTGGAATAAGTAAAACATTCTTAAGTGTTATTTTAGTGCACATATTAGTATAATGTACTGTTATAAATTCACATTTGatttaatattgattaatattaattttttttaattattgtaagtCAATAAGTCAACCTCATAATGAAAGGTTacatgtaataaatatatatatatagattcaattggtaaaaaaggctttttttattttctagaaGGTGGTGGGGGTGATAATTGGAAAAACTGATTCAAGAGGATTTCCTGACCGGAAAAGTTTGTTACCATaacattattcattttttttctatttacctttttttcttgtttgtttatttagatttttcacttttgttcagttcagtttcCCCTTTTAATCTGTTTCAAAATGTGTTTAGATGTTGGGTCTGAAAGATTCACTTTCAGCTTCACCATCAAAGATTCACCAGAACATTTTATCAATGTGTCTGCATGGGGAAATGAGGAATACATTCAAGCACTGAGCTGTCGCTTTCAGATCGGGGATTGTGGTGAGATtgtaaaacagctgttttagttgtcaattccaaaaaaaaaacacttttaataatACATAAAGTGTATTTAATTGACACGGTAAGCCAAAATAACGTCTTGTGTTTTAGTTGTAATTGAAAATCCCCTCGTTGTGACCAAGGACTATGAGAAAGAAGAACGGTTTTGCCCTTCAACAcctaggtaaaaaaataaaaatgaaaatagcatCAGATTTAGATACATCATACTCTGTATTTGTGACACATATACCTATTTTATCTCAGTTCCTACAGGTTGTTGCTTACAGAGACTCACTCGAGCATTAGGATATGCTCAGACATAGACACTGAGGCCAGGATTCTGCCGCTATTTCACATACCAATCAAAGACCCAAGAGATTTCTATTCGTTGGGAGACATTACTGCAAATGGACAAAGTCTGGATGGACACGTTATTAACATCCTAGCAGCTGTACAATCGGTTAGATTTCAACCGTTATCACCAGACTTTCTCTATGAGTGTGGGatattaacacacaaaaaaagttaatttcccACTAGACTTTATTCCCCATGTAAATTAGGCCTACTACAATTTTATCAACGATTGAGATTTTGTCATCATAGGTTGGAGAGGAGAAATTCTTTACAAAATCTGGTGGCTGCAAAGGACAGAGAATTGAAATAAAACTCTTCGATGACACTGGGAGATCATTTCCTTTTGTTTGGTGAGTAAAATTTGATTCAATttcattaaaatgaacaaaaacagcaGCAATAACATCATtcccttaatttttttattgctttttttcatATAGTTGGGATAAAGAGAATATTCGTCTGGTGCAAACGCTGACACAAAGAGAAACAGGTGTGATAAAATTTATTTGTCTGTTCTGTTTTTTGCTAACATGATAAAACAATAAGGCAGAGATGCTCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-88 Predicted to enable L-methionine-(R)-S-oxide reductase activity and peptide-methionine (R)-S-oxide reductase activity. Orthologous to human MSRB1 (methionine sulfoxide reductase B1).

Ensembl:

ensembl_id ENSDART00000193931

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010914 lncRNA upstream 301224 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00010912 lncRNA upstream 789772 17715697 ~ 17739456 (+) False XLOC_004630
TCONS_00010913 lncRNA upstream 789772 17716325 ~ 17739456 (+) False XLOC_004630
TCONS_00009171 lncRNA upstream 789772 17716512 ~ 17739456 (+) False XLOC_004630
TCONS_00009169 lncRNA upstream 898521 17626350 ~ 17630707 (+) True XLOC_004629
TCONS_00009195 lncRNA downstream 8788 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010915 lncRNA downstream 326274 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009224 lncRNA downstream 604339 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010732 lncRNA downstream 732755 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009244 lncRNA downstream 850434 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00009184 mRNA upstream 2007 18524953 ~ 18527221 (+) True XLOC_004640
TCONS_00009183 mRNA upstream 64253 18458502 ~ 18464975 (+) True XLOC_004639
TCONS_00009182 mRNA upstream 74806 18445604 ~ 18454422 (+) True XLOC_004638
TCONS_00009181 mRNA upstream 166806 18358082 ~ 18362422 (+) True XLOC_004637
TCONS_00009180 mRNA upstream 185575 18234557 ~ 18343653 (+) True XLOC_004636
TCONS_00009191 mRNA downstream 7950 18542954 ~ 18552343 (+) False XLOC_004641
TCONS_00009192 mRNA downstream 7950 18542954 ~ 18560608 (+) False XLOC_004641
TCONS_00009193 mRNA downstream 7950 18542954 ~ 18571563 (+) False XLOC_004641
TCONS_00009194 mRNA downstream 8779 18543783 ~ 18553114 (+) False XLOC_004641
TCONS_00009196 mRNA downstream 8877 18543881 ~ 18545916 (+) False XLOC_004641
TCONS_00009179 other upstream 403454 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009175 other upstream 588185 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009172 other upstream 801577 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009163 other upstream 1183561 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009153 other upstream 1568447 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009200 other downstream 63846 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009203 other downstream 146419 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009243 other downstream 850422 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009245 other downstream 853139 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009249 other downstream 1331994 19866998 ~ 19904415 (+) False XLOC_004671

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_01533946_01534527.mRNA False 723 mRNA 0.39 3 CI01000063 1533946 ~ 1534971 (+)