RNA id: TCONS_00009193


Basic Information

Item Value
RNA id TCONS_00009193
length 1961
RNA type mRNA
GC content 0.43
exon number 10
gene id XLOC_004641
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18529228 ~ 18571563 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttagtttattgagttcacctactgtatagcgcatatgtttggacacacatgccaacaaggggagaacatgcaaactccactcagaaatatCATCTGATttagccagaactcgaaccagtgaccttctggttgtgtgctaaccactgagccaccgtgtcaccaatGGCCTAACTGTCTCTAATAATACTTAATAGATATATAAAGACTGTTAGTATTGTGCAGTAAAGTAATATCATCTTGACAGACAGAAGAGTTTTTGTGCCTGTCGGAGTATCAGCGGACAAGCCTGCAGTGGAAGTTTCTTCTGGAGCGATGCAAAATATATCTGAAGGTTTTACATGTTtgtcacaagtttttttttttttttttggaatgttgATCATGTAAGGATGTAATTCACCATTTTTTTTAATCGCAGGTTCTTCCATCTCCCAGAAGGAGAAGTGGAATGAAGGCAGACATCTTGTCATGCGGACTCGCTGACCCCGTTGAAGTGAAGCAAAACCTTCCCTCATTTGTGGTTTGATGTTTTGCATCAGCAACCAAACAACACAAAACAGTTCCTCATATGAGAGCAAATCGATTGTAAACGTGCagaattgattgattcattcaattTAAATGCAGATTATTGAGTAATAGTTTTCACATTTGGTTCCATTGTCCTCCTTTACCTTACACtgtttttgttgtatatttaaattaattaacttaatttatttatatttattttggtaCAGTTAAACTGATGTaaccaattaaataaatattaaaaaagaaaatttttctGAACTGCGGAACTCTTGATTAAAGAATTGTTTCAGGGGGACGGTTTTGGAAGAAGCACCGCTTGGTTTGACATACATGTAAATAATGTCGTTTTCGCTTTTAAGATTATAGATTTACATATACCTAACTGGGGTTTAGCGCTTTCGTCTCGCTCAGGTATCTTTAGGTCAGGACTGAGCAGAGCTGATCATGAATGTGAATCAAGGCACCGTCGGAAGTGACCCGGTGATTCTCGCCACCGCTGGTTATGACCACACCGTCAGATTCTGGCAGGCCCACAGCGGGATCTGTACGAGAACTGTCCAGCACCAGGACTCTCAAGTCAATTCTCTTGAAGTAACACCTGATAGGAGCATGATTGCTGCTGCTGGTTATCAACACATTCGCATGTATGACTTAAATTCAAATAATCCAAACCCTGTGATCAATTACGATGGAGTCAGCAAGAACATCACGTCTGTGGGCTTTCATGAGGATGGTCGGTGGATGTACACGGGTGGAGAAGACTGCATGGCTCGCATCTGGGACCTGAGGTCCCGAAATCTTCAGTGCCAAAGAATATTTCAAGTCAATGCACCTATTAATTGCGTGTGTCTTCATCCCAATCAGGCCGAACTAATCGTTGGGGACCAAAGTGGTGTTATCCATATCTGGGATTTGAAAACTGACCACAATGAACAACTCATCCCAGAGCCAGACGTCTCCGTCAATTCAGTCCATATCGATCCTGATGCCAGTTATATGGCTGCAGTCAACAGCTCGGGCAACTGTTATGTGTGGAATTTGGCTGGAGGAATGGGGGATGAAGTGACGCAACTCATACCCAAGACAAAGATCCCAGCTCACAAACGCTACTCATTACGCTGCAAATTCAGCCCAGACTCCACATTGCTGGCCACATGCTCTGCTGACCAGACCTGTAAAATTTGGAGAACCTCAAACTTCTCACTGATGACAGAGTTGAGCATTAAGAGTAACAACCCAGGAGAGACGTCGCGAGGCTGGATGTGGGATTGTGCCTTTTCTGGAGATTCACAGTACATTGTCACAGCCTCCTCTGATAACCTTGCTCGTCTGTGGTGTGTGGAGACCGGAGAGATCAAGCGGGAGTACAGCGGCCATCAGAAGGCCGTTGTGTGTTTGGCCTTCAATGACAGTGTGCTTGGATAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6176 Predicted to be involved in TOR signaling and regulation of actin cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be part of TORC1 complex and TORC2 complex. Orthologous to human MLST8 (MTOR associated protein, LST8 homolog).

Ensembl:

ensembl_id ENSDART00000012743

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010914 lncRNA upstream 314950 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00010912 lncRNA upstream 803498 17715697 ~ 17739456 (+) False XLOC_004630
TCONS_00010913 lncRNA upstream 803498 17716325 ~ 17739456 (+) False XLOC_004630
TCONS_00009171 lncRNA upstream 803498 17716512 ~ 17739456 (+) False XLOC_004630
TCONS_00009169 lncRNA upstream 912247 17626350 ~ 17630707 (+) True XLOC_004629
TCONS_00010915 lncRNA downstream 289715 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009224 lncRNA downstream 567780 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010732 lncRNA downstream 696196 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009244 lncRNA downstream 813875 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010733 lncRNA downstream 887246 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00009185 mRNA upstream 7950 18529228 ~ 18535004 (+) False XLOC_004641
TCONS_00009187 mRNA upstream 8567 18532866 ~ 18534387 (+) False XLOC_004641
TCONS_00009188 mRNA upstream 9145 18532885 ~ 18533809 (+) False XLOC_004641
TCONS_00009186 mRNA upstream 11011 18529311 ~ 18531943 (+) False XLOC_004641
TCONS_00009184 mRNA upstream 15733 18524953 ~ 18527221 (+) True XLOC_004640
TCONS_00009199 mRNA downstream 7034 18578597 ~ 18656238 (+) False XLOC_004643
TCONS_00009201 mRNA downstream 34577 18606140 ~ 18656238 (+) True XLOC_004643
TCONS_00009202 mRNA downstream 91591 18663154 ~ 18666282 (+) True XLOC_004645
TCONS_00009204 mRNA downstream 109914 18681477 ~ 18710459 (+) False XLOC_004646
TCONS_00009205 mRNA downstream 109914 18681477 ~ 18717659 (+) True XLOC_004646
TCONS_00009179 other upstream 417180 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009175 other upstream 601911 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009172 other upstream 815303 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009163 other upstream 1197287 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009153 other upstream 1582173 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009200 other downstream 27287 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009203 other downstream 109860 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009243 other downstream 813863 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009245 other downstream 816580 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009249 other downstream 1295435 19866998 ~ 19904415 (+) False XLOC_004671