RNA id: TCONS_00009188


Basic Information

Item Value
RNA id TCONS_00009188
length 198
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_004641
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18529228 ~ 18571563 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGTCACCTCAGCAGCAGTTTCTGGTTTTGTGAGAAGCGAATGAGACTTGTTATCTCGTTATCTGAAGGTTAACAAAGATAAAAAATGACGTACGCTCCAATGGGAAGCTATGTGCCAATTTCTGACCTAAACATAAACATCACACACTCGaaGGTGGTGGGGGTGATAATTGGAAAAACTGATTCAAGAGGATTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-88 Predicted to enable L-methionine-(R)-S-oxide reductase activity and peptide-methionine (R)-S-oxide reductase activity. Orthologous to human MSRB1 (methionine sulfoxide reductase B1).

Ensembl:

ensembl_id ENSDART00000152443

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010914 lncRNA upstream 304881 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00010912 lncRNA upstream 793429 17715697 ~ 17739456 (+) False XLOC_004630
TCONS_00010913 lncRNA upstream 793429 17716325 ~ 17739456 (+) False XLOC_004630
TCONS_00009171 lncRNA upstream 793429 17716512 ~ 17739456 (+) False XLOC_004630
TCONS_00009169 lncRNA upstream 902178 17626350 ~ 17630707 (+) True XLOC_004629
TCONS_00009195 lncRNA downstream 9983 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010915 lncRNA downstream 327469 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009224 lncRNA downstream 605534 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010732 lncRNA downstream 733950 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009244 lncRNA downstream 851629 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00009186 mRNA upstream 942 18529311 ~ 18531943 (+) False XLOC_004641
TCONS_00009184 mRNA upstream 5664 18524953 ~ 18527221 (+) True XLOC_004640
TCONS_00009183 mRNA upstream 67910 18458502 ~ 18464975 (+) True XLOC_004639
TCONS_00009182 mRNA upstream 78463 18445604 ~ 18454422 (+) True XLOC_004638
TCONS_00009181 mRNA upstream 170463 18358082 ~ 18362422 (+) True XLOC_004637
TCONS_00009191 mRNA downstream 9145 18542954 ~ 18552343 (+) False XLOC_004641
TCONS_00009192 mRNA downstream 9145 18542954 ~ 18560608 (+) False XLOC_004641
TCONS_00009193 mRNA downstream 9145 18542954 ~ 18571563 (+) False XLOC_004641
TCONS_00009194 mRNA downstream 9974 18543783 ~ 18553114 (+) False XLOC_004641
TCONS_00009196 mRNA downstream 10072 18543881 ~ 18545916 (+) False XLOC_004641
TCONS_00009179 other upstream 407111 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009175 other upstream 591842 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009172 other upstream 805234 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009163 other upstream 1187218 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009153 other upstream 1572104 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009200 other downstream 65041 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009203 other downstream 147614 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009243 other downstream 851617 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009245 other downstream 854334 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009249 other downstream 1333189 19866998 ~ 19904415 (+) False XLOC_004671