RNA id: AMCG00020533


Basic Information

Item Value
RNA id AMCG00020533
length 1182
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00020533
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24251075 ~ 24271033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttacgGTAATCACTCGCCTGTAGGAGAGAAAACATCAGTTCAGCCATTGCGTGTACGCGCCGTGGCTCCAGACCTGCGCAGCACACCGGGTACCAGGAGGGGCAGGGATAGCGCGGCTCTAGGGCATCTCTGGCGTCTGCAGAAGCAATTCACAGACATGGCAAAAGAAGGAGTGGAGAAAACCGAGGAGACGGAGCACATGATAGAGAAGAATGGAGGAAAGGAGCAGGAAAGTGTCCTGGCTGTCGTGGACACCAAAGAGATGCGAGCCGTGGTGCTCACCGGCTTCGGGGGGCTCAACAAACTCCGGGTCACCAAGAAGGCAATGCCCGAACCACAGGAAGGGGAGGTCAAAATCCGCGTCAAAGCATGtggctTGAACTTCTTAGACTTGATGGTTCGGCAAGGAAATATTGATAACCCTCCGAAAACCCCTCTCGTCCCAGGGTTTGAGTGCTCTGGGATAATAGGGGACAGAGTAATGGCCTTTGTGAACTACAATGCCTGGGCAGAGGTGGTGTGCACTCCGGTGGAGTTTGTGTACAAGATCCCCGATGACATGACTTTCCCAGAGGCGGCTGCTTTCTCCATGAACTTTGTGGCAGCCTACATGATGCTCTTCGAAGTTGCCAACCTCCGGGAGGGCATGTCTGTGCTGGTTCACTCTGCTGGAGGGGGTGTGggACAAGCTGTGGCTCAGCTCTGCTCTACGGTACCCAATGTCACCGTGTTTGGAACCGCCTCACCCTTCAAGCATGAAGCCATCAAAGATTCTGTTACCCACCTCTTTGACAGAAATGCTGATTATGTACAAGAGGTTAAAAAAATCTCCCCTGAAGGCGTAGACATTGTTCTGGATTGTTTATGTGGCGAGAACACTGGGAAAGGCCTGGGTCTTCTGAAGCCGCTGGGCACATACATCCTGTATGgtTCATCGAACATGGTAACAGGGGAGACAAAAAGTTTCTTCTGCTTTGCTAAGTGTTGGTGGCAGGTGGAGAAGGTGAACCCTATTAAACTCTATGAGGAGAATAAAGTCATTGCTGGATTTTCCCTGCTAAACCTTCTTTTCAAACAAGGCGGAAGCAGCCTGGTAAAGTCTGCAGTGAACAAACTCATCTCCCTGTACAACCAAAAGAAGATCAAGCCATTAGTAGACTCGTTATGGGCTCTAGAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80086 lncRNA upstream 8398 24232739 ~ 24242677 (+) True G64009
TU80015 lncRNA upstream 157838 24088514 ~ 24093237 (+) True G63951
TU80011 lncRNA upstream 174600 24075049 ~ 24076475 (+) True G63948
TU80010 lncRNA upstream 178915 24070716 ~ 24072160 (+) True G63947
TU79992 lncRNA upstream 185738 24033037 ~ 24065337 (+) True AMCG00020529
TU80136 lncRNA downstream 217871 24488904 ~ 24540707 (+) False G64048
TU80133 lncRNA downstream 249803 24520836 ~ 24525575 (+) True G64048
TU80134 lncRNA downstream 249803 24520836 ~ 24565492 (+) False G64048
TU80159 lncRNA downstream 323097 24594130 ~ 24597787 (+) True G64069
TU80221 lncRNA downstream 420964 24691997 ~ 24695554 (+) True G64121
AMCG00020532 mRNA upstream 1824 24245541 ~ 24249251 (+) True AMCG00020532
AMCG00020534 mRNA upstream 18676 24226001 ~ 24232399 (+) True AMCG00020534
AMCG00020536 mRNA upstream 26006 24216071 ~ 24225069 (+) True AMCG00020536
AMCG00020535 mRNA upstream 40701 24202314 ~ 24210374 (+) True AMCG00020535
AMCG00020530 mRNA upstream 87361 24160277 ~ 24163714 (+) True AMCG00020530
AMCG00020531 mRNA downstream 33601 24304634 ~ 24308160 (+) True AMCG00020531
AMCG00020537 mRNA downstream 59853 24330886 ~ 24343935 (+) True AMCG00020537
AMCG00020543 mRNA downstream 176243 24447276 ~ 24453600 (+) True AMCG00020543
AMCG00020552 mRNA downstream 342840 24613873 ~ 24619867 (+) True AMCG00020552
AMCG00020553 mRNA downstream 351511 24622544 ~ 24630704 (+) True AMCG00020553
TU79996 other upstream 195483 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 197198 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 1176130 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 1878315 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 2108918 22135368 ~ 22142157 (+) True AMCG00020470
TU80130 other downstream 207802 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 803024 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 807109 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 1279878 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 3144963 27415996 ~ 27418520 (+) True G64730

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066862 False 1265 mRNA 0.49 9 NC_007118.7 65309738 ~ 65374668 (+)