RNA id: XM_026932236.2


Basic Information

Item Value
RNA id XM_026932236.2
length 1317
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC113537635
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14121038 ~ 14127293 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCTGCTCAGTTATTTTTAGTTGCGATTATTGAAGTCCTGTTTTtgtactgcatttaaaaaaacaaaaaacaaacaaagctaaTCATAGCTAAGCTAACAGTCGGCTAATTTTACCCACAAGTCCTTGCGCGAGGGAAGAGGACTCTTGTGACGGCTTGCTGCAGTTATGCTAGAGGGACGCGACGGAGAGCAGCTAAAGGACCGCTGTTCAGGAGAAAAGCACTTTCCTGTGGACTTTAATCTGAACATCACACTGAAGACACAGCAGCAGATCATCACATCTACATCAGCCGAAGTTGACCTACAAGGGCAAAATCTTCCAGACGACGCTTTGATCAAAGAGAAGAGGTTCATAGACGTCATGGGGAGCATGTCTCCATCCTGCTCCACTTCCTCTCATCGCTAtcgtcctcatcctcctcgTCCTGCTCCGGCAGCGATGCCCTACACTCGTGGGAACGGTTCTGTTCAGCCGCCGCCCAGCCAACAGCAgtctgGCTCAGGTaatgataatggtgatgatcCTTCTCCAGCATCAGCTAGGGCTCTAGCGAACGAGGGGAATGAGGATGATTCCAGAAGCCCCGTGCCGGAGACGAATCCCACGTCCATATACACACCCACGTCAGACACACCGGAGACCCAGGGAGAGGAGCAGGCAAGTCTGGAGAATGCAGAAAAGcTGAATGAGCCAGTGCAGGAGAGCAGAGATGGAGAAGGGGCGGAGCAAAGTGATACGGCCTGCATGGGAGATGAAGGAACGCCTGACAATACCACCAAGTGACACAGTAAGGAactgaaAGCTAGGTTTTACCGAGGCACTGGTTGTCTACGTGTGAATGAGAAACAAGACCCTGGCCGCTGAAAGTCCTGCTCAGTTAAGCTTACTGTAAGGATGAATGAGACGCCAGGACCCGCCTCCCCTTTACTGCAGGCTCCACCCCTTTACTCCCGAAAACTGATGTTGCCTTTATTATTCACAGAGCAATACAGGAATGGAAATGGGCATCAAGGGATaactggtgaagaaaaaaaagttagttaCTTGTTCATCAGTTCGACTGAATGAATGCACTTAGATGTGTGTATGAAgtctgcaagagagagagagagagagagagagagagagagagagagagagtatatgaTCTATGGTAGCATATATGAGGGAAACAGCATAACTTgaatttattctgttttatgcCAAAAACTTGATTGCTGATTAAAGAACAATATTGTGCCACTAAAACTAATTACTTAAGCACTGAGGATGTTTCACTATGCTTTAATAAAACTATCTGCTTGGAGAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444906 lncRNA upstream 78425 14036341 ~ 14042614 (+) False G375711
TU444909 lncRNA upstream 78425 14036341 ~ 14042614 (+) True G375711
TU444905 lncRNA upstream 99504 14021150 ~ 14021535 (+) True G375710
TU444671 lncRNA upstream 324504 13702127 ~ 13796535 (+) True G375496
XR_004577350.1 lncRNA upstream 566439 13548497 ~ 13554600 (+) True LOC117596173
TU444948 lncRNA downstream 12086 14139379 ~ 14141880 (+) True G375739
TU444983 lncRNA downstream 63605 14190898 ~ 14192300 (+) True G375771
TU444987 lncRNA downstream 76382 14203675 ~ 14204359 (+) True G375774
XR_004577348.1 lncRNA downstream 120394 14247687 ~ 14267611 (+) True LOC113537225
XR_004577353.1 lncRNA downstream 200076 14327369 ~ 14328701 (+) True LOC117596176
XM_034299978.1 mRNA upstream 36385 14075086 ~ 14084654 (+) False LOC113537316
XM_034299977.1 mRNA upstream 39236 14075087 ~ 14081803 (+) True LOC113537316
XM_026932360.2 mRNA upstream 60253 14043959 ~ 14060786 (+) True LOC113537730
XM_026932359.2 mRNA upstream 60253 14043959 ~ 14060786 (+) False LOC113537730
XM_026932165.2 mRNA upstream 87200 14023489 ~ 14033839 (+) True gtf2f2a
XM_026932208.2 mRNA downstream 47599 14174892 ~ 14180996 (+) True LOC113537615
XM_026931694.2 mRNA downstream 211449 14338742 ~ 14340428 (+) True junba
XM_026931695.2 mRNA downstream 211449 14338742 ~ 14340428 (+) False junba
XM_026931793.2 mRNA downstream 231449 14358742 ~ 14360604 (+) True LOC113537358
XM_026931792.2 mRNA downstream 247273 14374566 ~ 14375580 (+) True LOC113537357
TU444908 other upstream 78425 14023250 ~ 14042614 (+) False G375711
XR_004577362.1 other upstream 99908 14016523 ~ 14021131 (+) False gpalpp1
TU442901 other upstream 3111419 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 4244486 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5967184 8149960 ~ 8153855 (+) True G372351
TU445701 other downstream 952447 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 987179 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 1221961 15349254 ~ 15349325 (+) True trnaq-cug_18
TU445810 other downstream 1294106 15421399 ~ 15424798 (+) True G376467
TU445848 other downstream 1363753 15491046 ~ 15492518 (+) False G376488

Expression Profile