GENE ID: ENSDARG00000102750

Symbol Location Gene type Genome version Species
cdh1 7: 53059299 ~ 53117237 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000102750 (cdh1), yellow represents other genes.
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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Eye (cluster: 17)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Epidermal cells (cluster: 5)
    Epidermal cells (cluster: 8)
    Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 15)
    		 marker
    marker
    marker
    marker
    		 DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Epidermal cells (cluster: 7)
    Epidermal cells (cluster: 11)
    Epidermal cells (cluster: 13)
    		 marker
    marker
    marker
    		 DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 9)
    Epidermal cells (cluster: 13)
    		 marker
    marker
    		 DOI:10.1093/g3journal/jkac062
    DOI:10.1093/g3journal/jkac062
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 13)
    Epidermal cells (cluster: 16)
    		 marker
    marker
    		 DOI:10.1093/g3journal/jkac062
    DOI:10.1093/g3journal/jkac062
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 14)
    Epidermal cells (cluster: 22)
    		 marker
    marker
    marker
    		 DOI:10.1093/g3journal/jkac062
    DOI:10.1093/g3journal/jkac062
    DOI:10.1093/g3journal/jkac062
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT Epidermal cells (cluster: 14)
    		 marker
    		 DOI:10.1182/bloodadvances.2020003969
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 8)
    		 marker
    		 DOI:10.1182/bloodadvances.2020003969
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 9)
    Epidermal cells (cluster: 13)
    		 marker
    marker
    		 DOI:10.1182/bloodadvances.2020003969
    DOI:10.1182/bloodadvances.2020003969
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Microglia (cluster: 18)
    Cranial ganglion (cluster: 22)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Eye (cluster: 13)
    		 potential marker
    		 NA
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Epithelial cells (cluster: 12)
    		 potential marker
    		 NA
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    		 potential marker
    		 NA
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    		 potential marker
    		 NA
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    		 potential marker
    		 NA
    GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled) Enveloping layer cells (cluster: 7)
    		 potential marker
    		 NA
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo Epidermal cells (cluster: 8)
    		 potential marker
    		 NA
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells SHFP (cluster: 10)
    		 potential marker
    		 NA
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells Pigment cells (cluster: 5)
    		 potential marker
    		 NA
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells Epithelial cells (cluster: 2)
    		 potential marker
    		 NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Epithelialized macrophages (cluster: 2)
    Epithelialized macrophages (cluster: 3)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Epidermal cells (cluster: 10)
    Placode (cluster: 6)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Epidermal cells (cluster: 6)
    		 potential marker
    		 NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Pharyngeal endoderm (cluster: 10)
    Epidermal cells (cluster: 12)
    Placode (cluster: 5)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Epidermal cells (cluster: 11)
    Epidermal cells (cluster: 12)
    Placode (cluster: 4)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 3)
    Epidermal cells (cluster: 8)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Epidermal cells (cluster: 5)
    Epidermal cells (cluster: 7)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Epidermal cells (cluster: 10)
    		 potential marker
    		 NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment Epidermal cells (cluster: 5)
    		 potential marker
    		 NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Epidermal cells (cluster: 4)
    Periderm cells (cluster: 9)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Pancreas duct epithelial cells (cluster: 7)
    		 potential marker
    		 NA
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl Epithelial cells (cluster: 5)
    		 potential marker
    		 NA
    GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Epithelial cells (cluster: 4)
    		 potential marker
    		 NA
    GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA Epithelial cells (cluster: 5)
    		 potential marker
    		 NA
    GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
    GSE137784 (no HCC) liver baseline 6mpf, male, isolated from the CreLox zebrafish with HCC Epidermal cells (cluster: 7)
    		 potential marker
    		 NA
    PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Epidermal cells (cluster: 2)
    		 potential marker
    		 NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Basal cells (cluster: 2)
    Neuronal progenitor (cluster: 4)
    Endothelium (cluster: 7)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Endothelium (cluster: 3)
    Basal cells (cluster: 4)
    Endothelium (cluster: 7)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Basal cells (cluster: 6)
    Endothelium (cluster: 7)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2 Prop1+ group (cluster: 9)
    		 potential marker
    		 NA
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Prop1+ group (cluster: 11)
    		 potential marker
    		 NA
    PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Pancreas duct epithelial cells (cluster: 14)
    Pancreas duct epithelial cells (cluster: 7)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Amacrine cells (cluster: 7)
    		 potential marker
    		 NA
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) Gills (cluster: 13)
    Non-follicular epithelium (cluster: 5)
    Thyrocytes (cluster: 7)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Non-follicular epithelium (cluster: 3)
    Gills (cluster: 8)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells Tumor (cluster: 1)
    		 potential marker
    		 NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Epidermal cells (cluster: 14)
    Epidermal cells (cluster: 29)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Epithelial cells (cluster: 4)
    		 potential marker
    		 NA
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- Epithelial cells (cluster: 1)
    		 potential marker
    		 NA
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Epithelial cells (cluster: 7)
    		 potential marker
    		 NA
    GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT Epidermal cells (cluster: 10)
    		 potential marker
    		 NA
    GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 8)
    		 potential marker
    		 NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    GSE151354 (wild type) cartilage baseline 21dpf, wild type
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
    PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
    PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
    GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
    GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS
    GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated
    GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS
    GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated
    GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA
    GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
    GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
    GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
    GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
    GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
    PRJNA641144 (C_INV) tumor disease adult, ZMEL1-INV cells in vitro co-culture
    PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases
    PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors
    PRJNA641144 (C_PRO) tumor disease adult, ZMEL1-PRO cells in vitro co-culture
    PRJNA641144 (D_INV) tumor disease adult, ZMEL1-INV cells in vitro individual culture
    PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors
    PRJNA641144 (D_PRO) tumor disease adult, ZMEL1-PRO cells in vitro individual culture
    PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases
    GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/-

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