GENE ID: ENSDARG00000031483

Symbol Location Gene type Genome version Species
col9a1b 13: 39119460 ~ 39160018 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000031483 (col9a1b), yellow represents other genes.
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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Floor plate (cluster: 23)
    		 marker
    		 DOI:10.1093/g3journal/jkac062
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Floor plate (cluster: 16)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Floor plate (cluster: 10)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Notochord (cluster: 15)
    		 marker
    		 DOI:10.1371/journal.pone.0254024
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Fibroblasts (cluster: 16)
    		 potential marker
    		 NA
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Fibroblasts (cluster: 14)
    		 potential marker
    		 NA
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo Floor plate (cluster: 17)
    		 potential marker
    		 NA
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells Otic (cluster: 10)
    		 potential marker
    		 NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Cranial neural crest (cluster: 27)
    		 potential marker
    		 NA
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Notochord (cluster: 15)
    		 potential marker
    		 NA
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Floor plate (cluster: 13)
    		 potential marker
    		 NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Floor plate (cluster: 17)
    		 potential marker
    		 NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Optic vesicle (cluster: 14)
    		 potential marker
    		 NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment RPE (cluster: 14)
    		 potential marker
    		 NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Otic vesicle (cluster: 14)
    		 potential marker
    		 NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Muller glia cells (cluster: 5)
    		 potential marker
    		 NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Muller glia cells (cluster: 10)
    		 potential marker
    		 NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment
    GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells Otic (cluster: 7)
    		 potential marker
    		 NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Pronephros (cluster: 28)
    		 potential marker
    		 NA
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    GSE151354 (wild type) cartilage baseline 21dpf, wild type
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled)
    GSE158142 (2dpf) head baseline 2dpf, untreatment
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
    PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
    PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment
    GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/-
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT

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