Fish Single-cell RNA Database

GENE ID: ENSDARG00000023062

Symbol	Location	Gene type	Genome version	Species
ccn1	23: 45456490 ~ 45465320 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000023062 (ccn1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000102340	ptn	4: 1301436 ~ 1360495 (-)
ENSDARG00000059483	tead1b	7: 65813301 ~ 65924821 (+)
ENSDARG00000009196	anxa3a	5: 39087364 ~ 39095623 (+)
ENSDARG00000061923	amotl2a	6: 27991943 ~ 28001131 (+)
ENSDARG00000098801	sbno2a	2: 56811549 ~ 56884888 (-)
ENSDARG00000012942	itgb5	9: 22677503 ~ 22748015 (+)
ENSDARG00000003751	lats1	20: 1240461 ~ 1268869 (-)
ENSDARG00000042934	ccn2a	20: 25340814 ~ 25343490 (+)
ENSDARG00000075263	ankrd1a	17: 23462972 ~ 23472265 (+)
ENSDARG00000104138	igfbp7	14: 52369262 ~ 52379718 (+)
ENSDARG00000076192	ankrd1b	12: 16440708 ~ 16446373 (+)
ENSDARG00000002956	si:dkey-32n7.4	12: 4114401 ~ 4145033 (+)
ENSDARG00000023062	ccn1	23: 45456490 ~ 45465320 (+)
ENSDARG00000067719	wwtr1	22: 38049130 ~ 38114599 (+)
ENSDARG00000016188	NA	22: 17691381 ~ 17781213 (-)
ENSDARG00000028159	tead1a	25: 16356083 ~ 16431599 (+)
--	zgc:65873	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Endothelium (cluster: 15) Microglia (cluster: 18)	potential marker potential marker	NA NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Fibroblasts (cluster: 16)	potential marker	NA
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Fibroblasts (cluster: 14) Epithelial cells (cluster: 9)	potential marker potential marker	NA NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	Melanoma cells (cluster: 1)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Cranial neural crest (cluster: 1) Chondrocytes (cluster: 6)	potential marker potential marker	NA NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Epidermal cells (cluster: 16) Somites (cluster: 18) Cranial neural crest (cluster: 19) Cranial neural crest (cluster: 27) Chondrocytes (cluster: 5) Cranial neural crest (cluster: 6)	potential marker potential marker potential marker potential marker potential marker potential marker	NA NA NA NA NA NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Somites (cluster: 11) Epidermal cells (cluster: 22) Floor plate (cluster: 23) Cranial neural crest (cluster: 3)	potential marker potential marker potential marker potential marker	NA NA NA NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	Epithelialized macrophages (cluster: 2)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured	Mesenchymal cells (cluster: 5)	potential marker	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Mesenchymal cells (cluster: 8)	potential marker	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	Mesenchymal cells (cluster: 8)	potential marker	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	Endocardial cells (cluster: 3) Endocardial cells (cluster: 5)	potential marker potential marker	NA NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	Pancreas duct epithelial cells (cluster: 7)	potential marker	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	Endothelium (cluster: 9)	potential marker	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	Epidermal cells (cluster: 1)	potential marker	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	Epidermal cells (cluster: 2)	potential marker	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Basal cells (cluster: 2) Endothelium (cluster: 7)	potential marker potential marker	NA NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Basal cells (cluster: 4)	potential marker	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	Basal cells (cluster: 6)	potential marker	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	Pancreas duct epithelial cells (cluster: 7)	potential marker	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	Epithelial cells (cluster: 7)	potential marker	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Neuron (cluster: 8)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 8)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 9)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA706197 (1.25dpf)	embryo	baseline	1.25dpf, FACS sorted sox10:nEOS cells
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000023062

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences