CI01000057_03842028_03844033 (NDUFS7.S, MGC85267, NDUFS7)


Basic Information

Item Value
gene id CI01000057_03842028_03844033
gene name NDUFS7.S, MGC85267, NDUFS7
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3842028 ~ 3844691 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03842028_03844033.mRNA
AGCTCCTTATGGCCCATGACCTTTGGCCTGGCGTGTTGTGCTGTGGAGATGATGCACATGGCCGCCCCGCGTTATGACATGGATCGGTTTGGTGTCGTGTTCAGAGCCAGCCCCAGACAGGCTGATGTCATGATAGTTGCAGGAACACTCACCAATAAAATGGCCCCTGCACTGCGGAAGGTGTATGATCAAATGCCAGAGCCCAGATACATCATTTCCATGGGAAGCTGTGCTAATGGTGGTGGCTACTATCATTATTCTTATTCTGTGGTCCGGGGTTGTGATCGCATCGTTCCAGTGGACATCTACGTCCCAGGTTGTCCTCCCACAGCAGAGGCTCTGCTTTATGGAACTCTGCAGTTACAGAAGAAGATCAAGCGAGAAAAGAAAATGAGAATTTGGTATCGGAAGTGAGGTGTGATTGTGTTTGTGTGTCTGGTCTGAAATGTTTATTTAATACTGGTCATTTGTTGGGCTCAGAAGACTGATTTCTCAGGAGCTGCTCTGATTTGAGCGAAGCTCCTCCTCTTTGTAGCTACA
>TU278506
AGCTCCTTATGGCCCATGACCTTTGGCCTGGCGTGTTGTGCTGTGGAGATGATGCACATGGCCGCCCCGCGTTATGACATGGATCGGTTTGGTGTCGTGTTCAGAGCCAGCCCCAGACAGGCTGATGTCATGATAGTTGCAGGAACACTCACCAATAAAATGGCCCCTGCACTGCGGAAGGTGTATGATCAAATGCCAGAGCCCAGATACATCATTTCCATGGGAAGCTGTGCTAATGGTGGTGGCTACTATCATTATTCTTATTCTGTGGTCCGGGGTTGTGATCGCATCGTTCCAGTGGACATCTACGTCCCAGGTTGTCCTCCCACAGCAGAGGCTCTGCTTTATGGAACTCTGCAGTTACAGAAGAAGATCAAGCGAGAAAAGAAAATGAGAATTTGGTATCGGAAGTGAGGTGTGATTGTGTTTGTGTGTCTGGTCTGAAATGTTTATTTAATACTGGTCATTTGTTGGGCTCAGAAGACTGATTTCTCAGGAGCTGCTCTGATTTGAGCGAAGCTCCTCCTCTTTGTAGCTACAATAAAAGACTTTCTGCTTCAACGCTGAGTGCACTGAGTTCTGTTTGATGCAGATTGTATTTTTGTCATTGACTACGTTTACATGTGCACCAATAATGCGATTATTGGATGATGATGATATGAGACTGCGCAGCGAGTTGTGTTGACAGAGTTTAGCGATTTGGAGAAAAGAGAAAACTTCAGAATGTCATTCAGAGTTCATTCATGAAGTTGTGGGAACAACACACGGTATCCGTGTACGTCCGAGCACATGCACACTGTAGTCAGAGTGGTAATAATGCAATTAAGGTGTTTACATGCCTGTTTATTGTGATTAAAATCTGCGTACGATTGATTATGAGCTTAATCACATTCGTTTGATCAAAGTACTGTGTTTACATGAGGTAAAGTTTAACCACAATATTGCCAAAATCCAATTATAATCGTATTATGAGGGTGCATGTAAACACTCTCGTTGTGGTGCAGTAGTTATCGTTGTCGGGACACTTCTCATTCAGGTAAATTTTTAATGTACCATTACATTTTTGGGGGGG

Function

symbol description
ndufs7 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in aerobic respiration; electron transport coupled proton transport; and mitochondrial respiratory chain complex I assembly. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including eye; immature eye; musculature system; optic tectum; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 3. Orthologous to human NDUFS7 (NADH:ubiquinone oxidoreductase core subunit S7).

GO:

id name namespace
GO:0097060 synaptic membrane cellular_component

KEGG:

id description
K03940 NDUFS7; NADH dehydrogenase (ubiquinone) Fe-S protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03842028_03844033.mRNA False 540 mRNA 0.49 4 3842028 3844159
TU278506 True 1072 TUCP 0.43 4 3842028 3844691

Neighbor

gene id symbol gene type direction distance location
CI01000057_03817584_03827165 CTDSPL3 coding upstream 14863 3817026 ~ 3827165 (+)
CI01000057_03790271_03807327 ARID3A coding upstream 34701 3790189 ~ 3807327 (+)
CI01000057_03752329_03758938 R3HDM4 coding upstream 82919 3751404 ~ 3759109 (+)
CI01000057_03719251_03750681 NA coding upstream 91227 3719251 ~ 3750801 (+)
CI01000057_03709399_03714556 NA coding upstream 127469 3708944 ~ 3714559 (+)
CI01000057_03857470_03880767 DAZAP1 coding downstream 13311 3857470 ~ 3880879 (+)
CI01000057_03943917_03961522 GTPBP3 coding downstream 99758 3943917 ~ 3961537 (+)
CI01000057_03973241_03985010 USHBP1 coding downstream 129082 3973241 ~ 3985057 (+)
CI01000057_03999611_04005699 NR2F6, NR2F6A, NR2F6B coding downstream 155452 3999611 ~ 4007102 (+)
CI01000057_04008460_04012934 TAX1BP3.S, TAX1BP3, MGC83163 coding downstream 164031 4008190 ~ 4012975 (+)
G245357 NA non-coding upstream 25669 3815633 ~ 3816359 (+)
G245430 NA non-coding upstream 77403 3764311 ~ 3764625 (+)
G245349 NA non-coding upstream 133580 3707828 ~ 3708448 (+)
G245358 NA non-coding upstream 135174 3706357 ~ 3706854 (+)
G245428 NA non-coding upstream 158674 3683154 ~ 3683354 (+)
G245341 NA non-coding downstream 3144 3847303 ~ 3848415 (+)
G245346 NA non-coding downstream 5012 3849171 ~ 3851942 (+)
G245439 NA non-coding downstream 54165 3898324 ~ 3898641 (+)
G245359 NA non-coding downstream 55361 3899520 ~ 3907602 (+)
G245441 NA non-coding downstream 67432 3911591 ~ 3918597 (+)
G245401 NA other upstream 303586 3537569 ~ 3538442 (+)
G245231 NA other upstream 549466 3087096 ~ 3292562 (+)
G243991 NA other upstream 1189468 2635237 ~ 2652560 (+)
G243975 NA other upstream 1265176 2576453 ~ 2576852 (+)
CI01000057_02395285_02396439 NA other upstream 1445546 2394598 ~ 2396561 (+)
G245486 NA other downstream 365738 4209897 ~ 4212081 (+)
G245725 NA other downstream 1254526 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1729745 5564489 ~ 5579843 (+)
G245856 NA other downstream 1793495 5637654 ~ 5643340 (+)
G245857 NA other downstream 1811117 5655276 ~ 5657239 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location