RNA id: TU37912


Basic Information

Item Value
RNA id TU37912
length 1132
lncRNA type antisense_over
GC content 0.52
exon number 7
gene id G33443
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14351849 ~ 14356026 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAGTGTCATATTATTTGGATCTCCAGAGGTTGTGGGGATTTTAATGTCCACTTTACTGATGGCCTCCTTTGCTTTGTCCAGCTCCTCTCTAGCAGTGTTGATCAGGTCCTCTGCATCACGGACTCGGTTACGTGCTCTATCCGCCTGCGTTCCCGTGTTGTCCACTGTGTTCTTGATGTTCTGCAGTCTGTTCCACTGGTTGTTCAGGGTCTTGTTGATGTTGTTTAGACGGTCCAAAAGGCCTTTATCCACTTCTTTGCTAGCCTGAGCCTCTTCCAGTAAGTCCATTATTGTTTTCTCTGCCTCCTTAAGTCTGTCCTCAAAGGCCTTGTCACTCACTGTATTCTCACTGTTGTCCAGACCATCAATCAAATTCTGTAGGTCAAGAAGCTTCTGTCTCTGCTGGTTCACCTTGTCTCTGACCAGGCTGTAACAGTTGGGACACTGCTGGCAGACTGGAACGGAGCGGTTGTAGAAGTAGTTTTCCTCACACATGTCGCAGCGAGCTCCCACAAAGCCTTGGTGACACTGGCAACGGCCGTCTTCTTTGCACTGTGCGGACTGAGAGCCTTCTGGGTCACAGTCACAAGGTTTGCAACCCGATGAACTGAATCCAAAGAAGTTGACCTCACAGCGCTCACAGTGTTGACCTGTGACCCCAGGCTGACACTCGCATTGGCCGGTAACGATATCACACTGGCCGTTTGTGGAGCCAATAGGGTTGCAGTTACATCTTTCACAGCCTTTGCCGCTCCTTAGGTTGTAGAATCCGGGCTCGCACGCACCGCAGTCTCTGTTAATGACGTGTGGAAGACACTGACACTGGCCCGTCACCTGAGAGCAGGTTGTCTGCCCGTCTACTGTACCGTACGGAGAACACGAGCACGGTTTGCATTTGTCAGCTACGTTTGTGGCACGGGCATCGCCGTAGAAACCTTCTTTGCAACGGTCGCAAAAGACGCCGGCGGTGTTGTAGATGCACTTGAGGCATTCGCCCGACTCTCGGTTACAGTTGCCCACAGCGTTGGGGTCGATGTTGTTATTGCAACTGCAGGCCCGGCATGCCCTGACTGGACCTTTCTCACCAAGAGGGTCCCCGAAGAAGCCGTCGTCACATAGTTCACATCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38020 lncRNA downstream 85661 14265737 ~ 14266188 (-) True G33549
TU37951 lncRNA downstream 208600 14142988 ~ 14143249 (-) True G33480
TU37948 lncRNA downstream 219338 14132293 ~ 14132511 (-) True G33477
TU37944 lncRNA downstream 226462 14125166 ~ 14125387 (-) True G33473
TU37941 lncRNA downstream 253303 14098318 ~ 14098546 (-) True G33470
TU38050 lncRNA upstream 10128 14366154 ~ 14366406 (-) True G33579
TU38052 lncRNA upstream 14799 14370825 ~ 14375113 (-) True G33581
TU38054 lncRNA upstream 22241 14378267 ~ 14378539 (-) True G33583
TU37915 lncRNA upstream 28703 14384729 ~ 14386294 (-) False G33445
TU37914 lncRNA upstream 30162 14386188 ~ 14386358 (-) True G33445
CI01000004_14115087_14115790.mRNA mRNA downstream 236059 14115005 ~ 14115790 (-) True CI01000004_14115087_14115790
CI01000004_14041671_14073418.mRNA mRNA downstream 278079 14041076 ~ 14073770 (-) True CI01000004_14041671_14073418
CI01000004_13720679_13777075.mRNA mRNA downstream 574774 13720457 ~ 13777075 (-) True CI01000004_13720679_13777075
CI01000004_13354130_13419831.mRNA mRNA downstream 932018 13354130 ~ 13419831 (-) True CI01000004_13354130_13419831
CI01000004_13208157_13210917.mRNA mRNA downstream 1140932 13207881 ~ 13210917 (-) True CI01000004_13208157_13210917
CI01000004_14389315_14396492.mRNA mRNA upstream 33009 14389035 ~ 14396492 (-) True CI01000004_14389315_14396492
CI01000004_14425486_14425711.mRNA mRNA upstream 69338 14425364 ~ 14425711 (-) False CI01000004_14425486_14425711
CI01000004_14543631_14551256.mRNA mRNA upstream 185489 14541515 ~ 14551352 (-) False CI01000004_14543631_14551256
CI01000004_14557340_14560918.mRNA mRNA upstream 201255 14557281 ~ 14561042 (-) False CI01000004_14557340_14560918
CI01000004_14563131_14563558.mRNA mRNA upstream 206043 14562069 ~ 14563801 (-) True CI01000004_14563131_14563558
TU36531 other downstream 1967069 12376168 ~ 12384780 (-) True G32207
TU36455 other downstream 2570898 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 2938942 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 3601208 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 4944928 9377937 ~ 9406921 (-) True G30316
TU38237 other upstream 194774 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 212767 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 222432 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 225380 14581406 ~ 14581873 (-) True G33755
TU38263 other upstream 229145 14585171 ~ 14585745 (-) True G33756

Expression Profile