RNA id: CI01000012_12521676_12524692.mRNA


Basic Information

Item Value
RNA id CI01000012_12521676_12524692.mRNA
length 364
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000012_12521676_12524692
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12521676 ~ 12524692 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGTTTTCTCCAAGCTGAACTTTCATATACCTGAGGACTTGGTGAAGAAAATTGTGGTCAACACAGCAGGCTACATTGAACCAGTCCTTTGCTCTCTGAGAGAGAAGATAGAGGAAAAGAGAGCAGGAAAACAATTAGATGGCACACAGGACTTGGAATATTACAGCACAACAAATGGACAGCCGAGAACAGTGAATCATCTGATGGTTTTTGAGACCACTCCAGCCACCAATCAAGCCACCGTGAAGATAACAGACAAAGTCAGTGCTGCTGCAGCCTTGGGAACAAATGTGGATCCATCTGTCCGTTTACTCTTGGAGGAAAAGGAGCAAGCCATTTTGGCTTTACAGCAGACTGTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87837 lncRNA downstream 456701 12064562 ~ 12064975 (-) True G77014
TU87784 lncRNA downstream 575147 11945062 ~ 11946529 (-) True G76966
TU87773 lncRNA downstream 616941 11904512 ~ 11904735 (-) True G76956
TU87731 lncRNA downstream 621295 11897330 ~ 11900381 (-) True G76914
TU87768 lncRNA downstream 635999 11885447 ~ 11885677 (-) True G76951
TU87817 lncRNA upstream 127674 12652366 ~ 12665651 (-) True G76994
TU87974 lncRNA upstream 180647 12705339 ~ 12705552 (-) True G77128
TU87980 lncRNA upstream 194254 12718946 ~ 12719187 (-) True G77134
TU87995 lncRNA upstream 256068 12780760 ~ 12781057 (-) True G77149
TU87805 lncRNA upstream 373663 12898355 ~ 12899359 (-) True G76982
CI01000012_12490611_12503873.mRNA mRNA downstream 17803 12490518 ~ 12503873 (-) True CI01000012_12490611_12503873
CI01000012_12467799_12485431.mRNA mRNA downstream 34585 12467229 ~ 12487091 (-) True CI01000012_12467799_12485431
CI01000012_12437305_12438138.mRNA mRNA downstream 83054 12437152 ~ 12438622 (-) True CI01000012_12437305_12438138
CI01000012_12434858_12435727.mRNA mRNA downstream 85441 12433898 ~ 12436235 (-) True CI01000012_12434858_12435727
CI01000012_12427476_12429642.mRNA mRNA downstream 91824 12427261 ~ 12429852 (-) True CI01000012_12427476_12429642
CI01000012_12526785_12534198.mRNA mRNA upstream 2093 12526785 ~ 12534198 (-) True CI01000012_12526785_12534198
CI01000012_12540676_12541954.mRNA mRNA upstream 15540 12540232 ~ 12542559 (-) True CI01000012_12540676_12541954
CI01000012_12587953_12589094.mRNA mRNA upstream 63001 12587693 ~ 12589364 (-) True CI01000012_12587953_12589094
CI01000012_12592469_12594321.mRNA mRNA upstream 67266 12591958 ~ 12595201 (-) True CI01000012_12592469_12594321
CI01000012_12598963_12604426.mRNA mRNA upstream 72912 12597604 ~ 12605372 (-) True CI01000012_12598963_12604426
TU87842 other downstream 437416 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 437416 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 469469 12049044 ~ 12049222 (-) True G76984
TU86281 other downstream 1900805 10611915 ~ 10620871 (-) False G75608
TU87800 other upstream 429754 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1094584 13619276 ~ 13633819 (-) True G77287

Expression Profile