RNA id: TCONS_00049730


Basic Information

Item Value
RNA id TCONS_00049730
length 5409
RNA type mRNA
GC content 0.50
exon number 31
gene id XLOC_025182
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15907297 ~ 15988728 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATACCGACCGGGTGTGCATTGCAAAAACCGACCGTGAAGTGGCATCATGAGCACCTGATGACATTGTCATGATCTCATAGAGGCCGATTTGACACTTTTAatattgatttgtatattatcGTCGTTAAACGAGCTTCGGACAAGCGCCCGCAAAGATGATGGAGCTGGACGAGGTGGTGTACCAGGACGACTATGGGGCCGTGTCCGTCATGTCGGAGCGGGTTACGGGCCTGGCCAGCAGCATCTACCAGGAGTTTGAGCGCCTCATCAAAACCTACGACGAGGAGGTGGTGAAGGAGCTGATGCCGCTTGTGGTGAACGTTCTGGAGAACCTCGACTCGGTTTTGACGGAGAACCAGGAGCACGAGGTGGAGCTGGAGCTTCTCAAGGAGGACAACGAGCAGCTCATCACGCAGTACGAGCGGGAGAAAGCGCTGCGCAAACAGGCGGAGGAGAAGTTCATCGAGTTTGAAGATGCCTTGGAGGCGGACAAGAAAGATCTGCAAACCACAGTGGAGACTTTGGAGCTGCAAGCAAAGCAACTGGAGCTGAAGTCCAAGAACTATGCTGACCAGATCTCGCGTCTGGAAGAGCGAGAATCAGACATGAAGAAAGAGTATAATGCCCTTCACCAGCGCCACACGGAGATGATTCAGACATATGTGGAACACATTGAACGCTCAAAGTTGCAGCAGTCAGGCAGCAACCAGTCTGAATCCACAGGCTGCGGACGGTCTAAAACAGAGCGGCCTCCGTCACTGAGTTTGTATCCTGGTGGAGATGGCATGGTACGTGGGGGTCCTGGGGGGGCTAGAATGGTTTCGTCAGACATCTGGCACTCCAGCGATCTCAGCAGGCCTGTCTACGCCCCTGGCTACCAGGAGGATGGTTCAGATTCAGACTCAGTCGCAGCCACACCCAGCAGCACAGGCAGCAAATCAAACACTCCCACCTCATCTGTTCCCTCAGCCACTGTTACGCCCCTGAACGATGGGCTGGTGTCAGTGGGGGAGTATGACACGTCCCGCGGGCGTGCACGCGATCGCAGGACTGGGAAGCGGCTCAGTAGAAACATGGAGGTGCAGGTCTCTCAGGAAACCAGGAACGTCAGCATTGGAATGGGCAGTAGTGATGAGTGGTCAGAGTTTCAGGAAATAATAGACTCCACACCAGAGCTAGATATGTGCTTGGACCCTAGAATCTTCGGTGGAGGAAACAGTCCTTCGCAGGGCATAGTGAATGAAGCGTTCGGCATCAACACTGACTCTTTATATCATGAGATCAAAGACGCCAAGTCTGACATCATTGGTGATGTGGACGCAGGAGCGGAACTTCTCGTCCGGGATGATTTCTTTGGAATGGGGAAAGAAGTGGAAAATCTACTGACTGAGAATAAACAGCTACTGGAAACCAAGAATGCCCTGAATATTGTGAAGAATGACCTGATTGCTAAAGTGGACGAGCTGTCGAGTGAACAGGAGGTTCTCCGGGAGGAGCTGGAATCGGTAAAACAGTCCAAAACTAAAGTGGACCAGAGAGTGAAGGAACTGGAGGAGGAGCTGAAGAGGTTGAGAGCGGAAGCATTAGGAGCATCTCAGGACTCTAAAGACGAAGGTGGAGAGGATTACTCATCTCCACTGCAGGACGATGTGACCATGACGCAGAGACGCCGCTTTACCCGAGTGGAGATGGCCCGAGTGCTGATGGAGCGCAACCAGTACAAGGAGAGACTGATGGAGCTTCAGGAAGCCGTGCGCTGGACCGAGATGATCAGGGCGTCTCGAGAGAGTCCTCCTCTACCAGAGAAGAAGAAATCCATCATCTGGCAATTCTTTGCTCGTCTCTTCAGTTCATCGGCTAGTCCTCCTCCAGTAAAGCGGCCCTACACCAGTGTCAACATTCACTACAAGTCTCCGTCTCCGGCTGGCTACAACCAGAGACGCTCCCAAACCATGTGCCAGATCTCCACCTCCACCTGCATACGAGAGTTTCTGCCGGAAGAAATGCCCGTTAATGGTGTTGCGTCTCTCCTCAGCGACTCAGCACTCTGTACCCGCAGAGAGCAGCGGCGAGAACAGTACCGGCAGGTGCGCGAACACATGCGGCGCAAAGACGGCCCTATGCAGACCTGTGGCTGGAGCGTCCCATCCCGTCTCAAACAGGCCACTGAGAAAGAGGATAATCGCATGAAAAACGTCCCTGTGCCAGTGTACTGCCGCCCTCTAGTGGAGAAAGACCCCAACAGGAAGTTGTGGTGCGCGGCTGGTGTGGATCTCACTGGCTGGAAGACTTCCAGTCAGGAGGCTGCATCTGTAAAGCCGTCTAATGGCTCTGATCCATTGACGGCTGAAAACGAAGGTGGCGACGGAAAGAGCGAACAGAGCTCGCCAGAGAAGAAGAAGCCTAAGGAGCTGCATGAGACTGACCCCGTGAGCAGCCGCGTGTGGATTCTGACCAGCACTCATTCAGCCAGTAAAGTGGTCATCATTGATGCCAACCTGCCCTGCTCACTAGTCGACCAGTTTAACGTGTGCAATGCGCATGTGCTGTGCATCTCCAGTGTGCCAGCTGCCAGCGAGAGCGATTATCCAGCAGGAGAGATATTTCTGGAGCAGCAGGCTGGAGACGGAGCTTCAGAGGAGAAGGGTGGCGTGGAGGGCATGTTGGCAGGGATCACCATCGTGGGCTGCGCCACAAACTGCAGTGTTGTACGCAGCAACTGCTCTTCCCGCACCGATACGCCAGTGCAGGACCGAAGCAATGCTCCTACAGCTCCAGTGTGTAGAAGTTTAGCAGTGTCCCAGTCTGCAGAGGAAGCCACTGAAGCCATCGAGGTGACGGAGGAGGCAGGGCCTAGTGAGAATGCAGACAGCACCCTCGGGTCCTTCACAGAACACGTCTTTACTGACAACACGCACAGTGAGCCTGGTGTGGCGAAGGAAAAAGTGTCCTCAGCACCAGCAGACTCAGAAGAGGCCGCAGACGAGCGTGCAGGAACGAGTGCTGCTCCCACCATGTGGTTAGGAGCCCAAAACGGCTGGCTGTATGTCCACTCTGCAGTGTCCAACTGGAAGAAATGCCTCCATTCGATTAAGCTCAAAGACTCTGTACTGAGTTTAGTACATGTGAAGGGGAGAGTTTTGGTTGCTTTAGCTGATGGGACTCTAGCAATTTTCCACAGATCTGAAGATGGACAGTGGGATCTTTCCAACTATCATCTAATGGATCTGGGAAGACCTCATCACTCCATCCGGTGCATGGCTGTGGTCCATGATAAAGTCTGGTGCGGCAACAAGAACAAGATCCATGTGATTCAGCCCAAGAGCATGCAGATTGAGAAATCTTTTGACGCTCACCCACGCAAGGAGAGTCAGGTCAGGCAGCTGGCGTGGATTGGGGATGGAGTCTGGGTTTCAATCCGTCTGGACTCTACACTGCGCTTATATCACGCTCACACACACCAGCATCTACAGGACGTGGACATTGAGCCTTATGTCAGCAAGATGCTGGGTACAGGAAAGTTGGGCTTCTCCTTTGTCAGGATAACGGCCTTGCTGATTGGAGGAAACCGATTGTGGGTGGGCACAGGAAATGGTGTCATCATCTCAATCCCCCTGACTGAAACCGTAGTGCTTCACCGAGGCCAGCTGCTGGGATTGAGGGCCAATAAGGTGTCCCCTACATCATCAGGAGGCGTGATCCATGTATATGCAGATGATAGCACCTCAGAGAAGAGCAGCTTCATCCCGTACTGCTCCATGGCACAGGCGCAACTCTGTTTTCATGGACATCGAGATGCAGTCAAGTTCTTTGTGTCAGTGCCAGGCAATGTGTTGGCCACACTGAACGGCAGCGTATTGGACAGCCCATCAGAGTCTCAGGGGTCCTCGGCCCCGGCAGAAACAGAAGCACAGAGTCTTCAGAATGTGCTGGTGCTCAGCGGAGGCGAGGGTTACATTGACTTCCGCATCGGTGACGGTGAGGATGACGAGACGGAGGAAGCAGACGACGATGAAGCTCCTCAGATGAAGCCAGCCTTGTCTAAAGCAGAGAGGAGTCATATCATCGTCTGGCAGGTTTCTTATGTTCCGGAGTGATTTAAACAAACACCTCCTGCCTGTACCCCCCACCCCCTATAAATTCCCCTTGTCCCAAAGACAAAGTATGAGTCCTTTCTGTAACTTCGCCCCACGCTCCGTAACAACCACGGCCTTGTAACTACCCCTCTTTAAACTCTTATACTGACTCCATTAGCCTGTATTTCCCTCAATTATAACTACCTTCAATCCACCTCGTAACGTTTCcctccaaaaacacacacaaagatcAAAACTTCCTGCATCTTACTACTGAGTTCAAAGGAAATGCAtataaacagcttaaaccagaaCCAAAACTAAGTTCCTGAAAGAACTACccagttgtttttctttttgccaAATAACCCTGACCTTTATCTGTACAGTCCCTCAGCACACAGCTCACTGAATCAGGAGATCATTCTGGAAACACTGGTGTACATGCAAACAAGAGGGCAAAACCAAGAGAGCTCAATATGTAAATACTGGATTAAATCTTGCACTGCAGAGAGAAATGTGAAGCAATAGATAAGGATAATTAAATGAACGTTCGGGATCGGCTGGAAGTCTTGCACAACCCAAACATGTTTCAGTGTCATCTAAAATATTGTAaactaaagagatagttcatcttAAAATGAAAGATCTGCCATCGTTTATTCATCATCAACTTCTTCCAAACTCATTTACTTCTGTTAAACAAAGGAAGATATCTGGAAGAATGTCAGCAACCAATCAGATTGATTACAATAAATACCATGGCAGTAAATGGGTGGCAAGCTTTGTTTGGTTGCtgacattcttccaaatatctttctTTATATCAAAAAAAACGTGTACAGGATTGGAAGAAATGTGAGTAAATGGTAGAATGttgttttttggggtgaactatcccttcattTCTTTTAAAGCTGGGGTAGTCTGCAtagtttagttgcaaccctgcttcaacgCACTTCCCTGTAGGTTTTTAAACAAGCCCAAAGgatttaattagtttgatcaggtgtgtttaattagggttggaactaaactgtgcagagctgcggccctccaggagtcgagtttgacacctgtgctttaaagcAACATCTCTTTAACCCCAGTTGCAGTCCTTTATTTATTGTTCCGCCTCAGTGAGATGTGTGCTGACTGGATCTGCTGCCTTCCCTCTGGGATAGTGAGCATGAGGTAAATCGAAGCCTTTGATTGGCTGTCGGTCTGACAGAGATGGACATCCCGCCCAATCGCCTTGTATGTAAATCATCACTCTGTGTTCTCTGTGTGGTATTAAGTATTAAGAAATAAACGTTTATGTGCTGAA

Function

GO:

id name namespace
GO:0007257 activation of JUN kinase activity biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0008090 retrograde axonal transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005078 MAP-kinase scaffold activity molecular_function
GO:0008432 JUN kinase binding molecular_function
GO:0030159 signaling receptor complex adaptor activity molecular_function
GO:0019894 kinesin binding molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway

ZFIN:

id description
ZDB-GENE-090303-6 Enables cargo adaptor activity. Acts upstream of or within axon extension; regulation of JNK cascade; and retrograde axonal protein transport. Predicted to be active in cytoplasm. Is expressed in central nervous system; peripheral nervous system; and posterior lateral line ganglion. Orthologous to human MAPK8IP3 (mitogen-activated protein kinase 8 interacting protein 3).

Ensembl:

ensembl_id ENSDART00000139206

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052333 lncRNA upstream 40895 15865921 ~ 15866402 (+) True XLOC_025180
TCONS_00052627 lncRNA upstream 214710 15685362 ~ 15692587 (+) False XLOC_025174
TCONS_00052628 lncRNA upstream 214710 15685494 ~ 15692587 (+) False XLOC_025174
TCONS_00052629 lncRNA upstream 214710 15685755 ~ 15692587 (+) False XLOC_025174
TCONS_00052626 lncRNA upstream 260630 15639452 ~ 15646667 (+) True XLOC_025173
TCONS_00049732 lncRNA downstream 66281 16055009 ~ 16055732 (+) True XLOC_025183
TCONS_00052630 lncRNA downstream 164496 16153224 ~ 16161459 (+) True XLOC_025184
TCONS_00052631 lncRNA downstream 197865 16186593 ~ 16241340 (+) True XLOC_025185
TCONS_00049734 lncRNA downstream 241199 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00049755 lncRNA downstream 885673 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00049729 mRNA upstream 5068 15893039 ~ 15902229 (+) True XLOC_025181
TCONS_00049728 mRNA upstream 71157 15828999 ~ 15836140 (+) True XLOC_025179
TCONS_00049727 mRNA upstream 71390 15828426 ~ 15835907 (+) False XLOC_025179
TCONS_00049726 mRNA upstream 83197 15817644 ~ 15824100 (+) True XLOC_025178
TCONS_00049724 mRNA upstream 96260 15805917 ~ 15811037 (+) False XLOC_025177
TCONS_00049733 mRNA downstream 241183 16229911 ~ 16232442 (+) False XLOC_025186
TCONS_00049735 mRNA downstream 277196 16265924 ~ 16285259 (+) True XLOC_025187
TCONS_00049737 mRNA downstream 460762 16449490 ~ 16458018 (+) False XLOC_025189
TCONS_00049738 mRNA downstream 467021 16455749 ~ 16457014 (+) True XLOC_025189
TCONS_00049739 mRNA downstream 577633 16566361 ~ 16590254 (+) False XLOC_025190
TCONS_00049721 other upstream 133119 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049719 other upstream 187474 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049704 other upstream 1222694 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049690 other upstream 1507645 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049684 other upstream 1662513 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049736 other downstream 384284 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049741 other downstream 580537 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049746 other downstream 679875 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049749 other downstream 735886 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049766 other downstream 1406511 17395239 ~ 17461885 (+) True XLOC_025203

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000035_00289404_00322769.mRNA True 5117 mRNA 0.51 30 CI01000035 288571 ~ 323351 (+)