RNA id: TCONS_00049737


Basic Information

Item Value
RNA id TCONS_00049737
length 2743
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_025189
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16449490 ~ 16458018 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGGTGAGAgagagtcagagagagagagagagagaagagagagcagTGTTTTAAATGTTCAAAGAGAGAATCGTTTGCGAGGTGTTGCACGGAAACATTAGGAAATCTTAGCCATGCATGCATAAGCCTCAGGATGACCACGACTGAGCTGAAGATCTCTGGAACCTGTTAGCACACAGATAAGACCCTCCTTCCAATATATGCGTACATGTGCGCGACTTtccatctctgtgtgtgtgacgCTAAAGATGAGGACCTCGCTGGACAGTCAGGATCCCTTTTCTTCCGCTAAGGGAACCATGTTATTGGTGGGGGAGCTGTGAGAAACTCTGCGGAATAATGCTTTAGTTCAACTTCAGTTGTTAGGTATTTCCATGCACACGAGGGGAAGAGAAAAGGCAACACGAACTGATCCAGAGCTGCGTTGGTACTCTCTCCTGCTTACGGACTGCTCACAGTCAGGCAGAGTGGCATGAGTGTGGGCAAGCCCCACCGCTATAACATCGTGTCATCGTCGGAGGAGGACGTGGGCCGTCACGGCACCATGCCCGCCCTCGGCAATGGCTTCGGAAATGGCAAGATCCAGACCCGGCGGAAGCTGCGGAGCCGCTTCGTTAACAAAACCGGCCAATGCAATGTCAGCTTCGCTCACATGGACGAGCAATCCCAGCGATACCTCGCTGACATCTTCACCACCTGCGTGGACAGTCGCTGGCGCTGGATGTTTCTACTTTTCTCCCTCGCATTTGTCATCTCCTGGTTAGCGTTCGGATTTGCGTTCTGGCTTATCGCTCTTGTCCATGGTGATCTAGAGAAACCTCAAGAAAACTTCACGCCATGCGTCATGCAGGTCAACAGCTTCGTCGCAGCGTTTTTGTTCTCAGTTGAGACGCAAACAACAATTGGCTACGGATTTCGCTGCGTGACTGAGGAGTGTCCTTTAGCTGTGTTTATGGTCGTCTTCCAGTCCATTGTGGGCTGCATTATTGACTCGTTCATGATTGGTGCAATCATGGCAAAAATGGCGCGACCTAAAAAACGTGCAGAAACGATACTGTTCTCGCATAACGCCGTCATCTCAATGCGCGATGGGAAGCTCTGCCTCATGTGGCGGGTTGGGAACTTGAGGAAGAGTCACATTGTTGAGGCTCATGTGCGGGCGCAACTTATTAAACCCCGAATTACAGAAGAGGGCGAGTACATACCTTTGGATCAAATTGACATCAATGTTGGGTACGACCAAGGTCTGGACCGCATCTTCTTGGTCGCTCCCCTCACCATCCTCCATGAGATAAATGAGGAGAGTCCGCTGTTTGGAATCAACCAGCAGGATCTGGAAACATCTGATTTTGAGATTGTGGTCATACTGGAAGGAATGGTGGAGGCGACTGCCATGACGGCTCAGGTGCGCAGCTCCTACCTGTCCAGTGAGATCTTATGGGGCCATCGCTTTGAGCCTGTGGTATTCGAGGAGCGCAACCAGTATAAGGTGGACTATTCGCACTTTCATAAAACCTACGAGGTGCCCTCGACGCCACGCTGCAGCGCCAAAGACCTGGAAGACAACAAATCCTTGGAGTCCGGTGCCAACTTCTGCTATGAGAATGAGTTAGCTTTTATTAGCAGGGATGAGGAGGAGCAAGAGGAGGACAGGGGTGAGAGGGGGACTGAGCTAGAGACACTTTCAGCCAATCTGAACTTTGATCAGAGGTCGTATCACAAAGAGTCTGAAATTTGACCCCAGATCAAAGTCTTTGCTTTATTGTAGACTCGATAGCCTATTCTTTTAAGGGCTTTTCACACTGCGCTTAACCCCGGTTCATCGTCATTCTAAAAACCACTTTAATCCATGGGTAACAACATGTTTCACACCTGTAATTTGAAAGCAGTTTTAGCCCCAGGGTTTTAAAACCCTGCTCCGGAGCTGGGTTTAGCACAGCATTTGAGGTGTTAATCCTGGATTGTGGTGCTAAATTTGTTCAGTGTGTAATGGAGTGGTTTTTGTTTGCTGCTGCTGGATTCTTGGCAACAGACGGCCAATCAGAAACTGATCAGCGAGGTTCAAGTCATgctatttataaatgcagcagaAACAGTAGTAAGTGAGAGAAAAGTCAGAAAAATTGTAATCAGAACATTGTAAGCTGGCATACTTTGCTCCTTGctttcattcatttgtacttttgCCTTTGTTTTCTTGCCTTTGCGTATCTCACGAgacttaaaataactaaaaacctACCCGGTGACATAAAGCTGCCAAGATGTGGAAATGCAGTGTAAAAGTTACCTGCTGGTCAGCCAATTAGCGACAGTGACAGCGACAAATATCCAAATAAGAACCGTTAATCTGGGGTTTAGGAATGTACAGCATGAAACGTCTGTTTGTGAATACCCAGGATTATTCGTTTTACCACTAGTAtggtatgagcagtgtgaaacatgATTACAAATAACCCAAGACTCAGGCTCCGTTCAccctaatatgttttagttttaaaacgcataagttttgcttcGGTTACGCCTTTAGTCCACATTACCCCAGAGATTTTAAGCGCCAAAACCTGAGCTTTTTGAaaaaacgctgaagaggctgtttccattttaaattgctgctgctccgtgtcagtgtggatgtggaaaaaacggagacatctgaaaatggaggcatgGCTGCAGACATGCACTTATCTGactggggctttttcctcaatattaactCAAAAGTTACTCAAAGTA

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-79 Enables inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in atrium and cardiac ventricle. Orthologous to human KCNJ12 (potassium inwardly rectifying channel subfamily J member 12).

Ensembl:

ensembl_id ENSDART00000141467

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052631 lncRNA upstream 208150 16186593 ~ 16241340 (+) True XLOC_025185
TCONS_00049734 lncRNA upstream 217208 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00052630 lncRNA upstream 288031 16153224 ~ 16161459 (+) True XLOC_025184
TCONS_00049732 lncRNA upstream 393758 16055009 ~ 16055732 (+) True XLOC_025183
TCONS_00052333 lncRNA upstream 583088 15865921 ~ 15866402 (+) True XLOC_025180
TCONS_00049755 lncRNA downstream 416383 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00052632 lncRNA downstream 417476 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00052633 lncRNA downstream 417739 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00049777 lncRNA downstream 1195786 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00049802 lncRNA downstream 1548093 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00049735 mRNA upstream 164231 16265924 ~ 16285259 (+) True XLOC_025187
TCONS_00049733 mRNA upstream 217048 16229911 ~ 16232442 (+) False XLOC_025186
TCONS_00049730 mRNA upstream 460762 15907297 ~ 15988728 (+) False XLOC_025182
TCONS_00049731 mRNA upstream 462071 15907458 ~ 15987419 (+) True XLOC_025182
TCONS_00049729 mRNA upstream 547261 15893039 ~ 15902229 (+) True XLOC_025181
TCONS_00049739 mRNA downstream 108343 16566361 ~ 16590254 (+) False XLOC_025190
TCONS_00049740 mRNA downstream 108348 16566366 ~ 16591648 (+) False XLOC_025190
TCONS_00049742 mRNA downstream 154556 16612574 ~ 16654088 (+) True XLOC_025191
TCONS_00049743 mRNA downstream 204191 16662209 ~ 16683623 (+) False XLOC_025192
TCONS_00049744 mRNA downstream 205355 16663373 ~ 16679457 (+) False XLOC_025192
TCONS_00049736 other upstream 76363 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049721 other upstream 675312 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049719 other upstream 729667 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049704 other upstream 1764887 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049690 other upstream 2049838 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049741 other downstream 111247 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049746 other downstream 210585 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049749 other downstream 266596 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049766 other downstream 937221 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049769 other downstream 1014129 17472147 ~ 17522927 (+) True XLOC_025202

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000133_00106756_00108024.mRNA True 1690 mRNA 0.49 1 CI01000133 106756 ~ 108445 (+)