RNA id: TCONS_00049753


Basic Information

Item Value
RNA id TCONS_00049753
length 2658
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_025196
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16841942 ~ 16872909 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCATTCTCAAACGGAGTTACCGCTGGCTGGACGTGCACTCACCGCTCATCTGTCGCGGCTCTAATTGAGTTCTTGCTCCGGTGAACGGCTGGCATCATCCCGCAGCAGGACTTAAACGGCAAAATGATGAACAGGAACGGAATGGTCACAAAAATCCGCACTCGGATAAGGACCGACCCCTTCAAGAACAACTATGACCTGGTCGGCAGAGAGCTTGGCAGGGGCAAATTTGCAGTGGTAAAGAAGTGTGTGGAGAAAACTACCGGCAAGGAGCATGCAGCGAAGTTCCTGCGAAAGAGGAGGAAGGGTCAGGACTGCCGAGGCGATATCCTCAATGAAATCGCGGTTCTGGAGTCGGCAGAGGCCAATCCTTATGTGGTGGGGCTGCATGAGGTTTACGAGACCACCTCGGAGATCATCCTCGTCCTGGAGTGTGCTGCCGGAGGTGAAATTTTCAATCAGTGCGTTGCCGATAATGACGAGGCTTTCACAGAGAAAGATGTCATCCGATTGGCTAGGCAGATTCTGATGGGCGTGTCCTGTCTCCATCAAAACAACATAGTTCATTTGGACTTGAAGCCTCAGAACATCCTGTTGACGAGCGCTCAGCCGCTGGGTGACATCCGTATCGTGGATTTCGGCTTATCTCGGCGGGTGGACAGCGTGTCAGAGGTTCGGGAGATCCTGGGCACTCCTGAATATGTGGCTCCTGAGATCCTGGACTATGAGCCCATCAGCACAGCTACTGACATGTGGAGCATTGGGGTACTGACATATGTGATGCTGACTGGCGAGTCTCCTTTTCTGGGAGAGGAAAAGCAGGAGACCTTCCTGAACATCTCGCAGGTGAACGTGGACTACTCGCAGGATGTCTTCCAGGGCATCTCTGACCTCGCAGTGAACTTCATCCAGTCTCTACTCATCAAAAACCCCAGAAAGCGCTCAACCGTGGAGCAGTGTTTAAATCACTCCTGGTTAAGACTAGACTCTCTCCACCAGACAGTAGACACTTGTCTCGAAGAGCAGGAAGCCAGTCAGTCCGAATCAGAGCCCGAAAGCCCCGTCCCATCCCCAGAACTGCTCATCCTGCCTTCATATCCAACCTGCCCCGGTCAGGGGGAGCTAAAAACAGGCCGGGACACTTTCAGCTTCACAGAGCCCTTCTCTCCTCATCCCGAAATACAAGAGCTCATCTATTAATCACAGAATCTGAGGAACAGAAAATAAACTGATACGGTCTAGTTTAAACTGGACATCAGCGTCGTCAGATTGTGTGGGGTGTGTAACCGTCCAGATTTATGAATGTGATGACCACAGAAagcgcatgtgtgtgtgggtCTAAAACAGATCTGAGATTTTAagctcttaaagggacagctcacccaaAAGTGAATTATTTATGATTTCCTCTTCCTCAAGAGACTTTCAAACTTGTATGATGtgatttcttttgttaaacacaaaagaagatatttagaaatatgataaccctgtaaccattgacgtacATATTAGgaaaaactaattttataaaAGTCATTGTTTAAAAGAGGGTTTGAAAAATGATAAAGATCtgtaacttccatagtaggaaaaacaaattccatggaagtcaatggttacagatctttagcatttttcaaatgatcttcttttgtgttcaacagaagaaaagtgAAGCATGAGTtcaaaaaaatgctatttttggtGATCTGTTTCTTTAAATAAGGCTCTTGTTTGAGGTTGTGAACTCCTCAGATCGCAGTAATGTACCGTTTCTGGTTTTAAAGTGGATCACACCTTCTCTGCTGTCTGAACTCGCTCAAAGTCGAAGTCTTCTCTGGAAGTGCCTGCTGCATCTGAGGAAGGAAACCAACGATCTTTGTCTCCTCATCGCTCTTCGTTGGGACTGTCGTGTTATGATATGCAATGAAGAATCGATGCTGCCTCTTTCCTCTGGACTGTATATGGACATCTTCATTCTGATTCTTTACAAACAGATTCACAGACTACTTTCGTTCTAGCACTTTtggtggggaaaaaaacaaaacgtgtATTAAAGTCTCCCAACAAGCACAGGTTAATTCGTACAGTCACTGTGTGTTTGGTTTCTCACACCACTGCTTGTATTCATTCCTGTTCTTATTCATAACAAGTTTGCTATAATTGCACAAATGTcctgtgtgtttgttgttttagAAGGGCATTGTTTGTTTTTGCCTTGGTGTTTTAATATCTTCTCTGTGTTGTTTTTTGAATGTCTGGAAGGGCATCGAGGAGGGAAATTTTCCAACTTGTCAGTAATATTTTGTGGCTGACTAAGAGATTTTCGGACCATTGTGGGAGAGATGTGTTTGCATGTTCAGAAGAACAGAGCATATAAAAATAAGGCTTTGATTTATTGTATAGTTTTTATGTTAAAGAaaggaatgtaaaaaaaaaaagtatttttctaCTGTTGtgctattttataaataatatgagaaaataaattgtaatattaatgtagatctttgttttcttttttgttttgtttttttaaccagcTGTGCTTATAAAAAGTTTGCACTTGTGTCCGGTCGGACTACTTATATGTATTATTGGCATGCCTGGCAAGatactgaagaaaataaatgatcatttttgtATTAAACTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-427 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and positive regulation of apoptotic process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human STK17B (serine/threonine kinase 17b).

Ensembl:

ensembl_id ENSDART00000023985

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052631 lncRNA upstream 600602 16186593 ~ 16241340 (+) True XLOC_025185
TCONS_00049734 lncRNA upstream 609660 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00052630 lncRNA upstream 680483 16153224 ~ 16161459 (+) True XLOC_025184
TCONS_00049732 lncRNA upstream 786210 16055009 ~ 16055732 (+) True XLOC_025183
TCONS_00052333 lncRNA upstream 975540 15865921 ~ 15866402 (+) True XLOC_025180
TCONS_00049755 lncRNA downstream 1492 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00052632 lncRNA downstream 2585 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00052633 lncRNA downstream 2848 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00049777 lncRNA downstream 780895 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00049802 lncRNA downstream 1133202 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00049752 mRNA upstream 67868 16771797 ~ 16774074 (+) True XLOC_025195
TCONS_00049751 mRNA upstream 71624 16762483 ~ 16770318 (+) True XLOC_025194
TCONS_00049750 mRNA upstream 91906 16724614 ~ 16750036 (+) True XLOC_025193
TCONS_00049748 mRNA upstream 95446 16722014 ~ 16746496 (+) False XLOC_025193
TCONS_00049745 mRNA upstream 161971 16664212 ~ 16679971 (+) False XLOC_025192
TCONS_00049756 mRNA downstream 49317 16922226 ~ 16973125 (+) True XLOC_025198
TCONS_00049757 mRNA downstream 103186 16976095 ~ 17012340 (+) True XLOC_025199
TCONS_00049759 mRNA downstream 157756 17030665 ~ 17095351 (+) False XLOC_025200
TCONS_00049758 mRNA downstream 157756 17030665 ~ 17095351 (+) False XLOC_025200
TCONS_00049760 mRNA downstream 157756 17030665 ~ 17107445 (+) False XLOC_025200
TCONS_00049749 other upstream 112927 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 163292 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049741 other upstream 253313 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049736 other upstream 468815 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049721 other upstream 1067764 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049766 other downstream 522330 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049769 other downstream 599238 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049790 other downstream 1005583 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049819 other downstream 1564576 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 1883353 18756262 ~ 18769951 (+) True XLOC_025228

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_05795972_05811363.mRNA False 1560 mRNA 0.45 7 CI01000034 5795835 ~ 5811781 (-)