RNA id: TCONS_00049754


Basic Information

Item Value
RNA id TCONS_00049754
length 746
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_025196
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16841942 ~ 16872909 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCACTCACCGCTCATCTGTCGCGGCTCTAATTGAGTTCTGTGAGTTTCTCCGACACCGTAAATTAGATTGTACAGCATTTCCACGGCTGGGTTAAACTTGTGCTTGTGAAAAAGACGgatattttttgcttttgaaaCTAATTTCTCTAAGCATCATCACTTTTTTTTGCTCCCCAGCCGGTTTGAATAGTAGTCTATGGTAGTGACCTGATGGACTAAACTCTTATATTTGTACCCAGTGCTCCGGTGAACGGCTGGCATCATCCCGCAGCAGGACTTAAACGGCAAAATGATGAACAGGAACGGAATGGTCACAAAAATCCGCACTCGGATAAGGACCGACCCCTTCAAGAACAACTATGACCTGGTCGGCAGAGAGCTTGGCAGGGGCAAATTTGCAGTGGTAAAGAAGTGTGTGGAGAAAACTACCGGCAAGGAGCATGCAGCGAAGTTCCTGCGAAAGAGGAGGAAGGGTCAGGACTGCCGAGGCGATATCCTCAATGAAATCGCGGTTCTGGAGTCGGCAGAGGCCAATCCTTATGTGGTGGGGCTGCATGAGGTTTACGAGACCACCTCGGAGATCATCCTCGTCCTGGAGTGTGCTGCCGGAGGTGAAATTTTCAATCAGTGCGTTGCCGATAATGACGAGGCTTTCACAGAGAAAGATGTCATCCGATTGGCTAGGCAGATTCTGATGGGCGTGTCCTGTCTCCATCAAAACAACATAGTTCATTTGGACTTGAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-427 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and positive regulation of apoptotic process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human STK17B (serine/threonine kinase 17b).

Ensembl:

ensembl_id ENSDART00000145317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052631 lncRNA upstream 600635 16186593 ~ 16241340 (+) True XLOC_025185
TCONS_00049734 lncRNA upstream 609693 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00052630 lncRNA upstream 680516 16153224 ~ 16161459 (+) True XLOC_025184
TCONS_00049732 lncRNA upstream 786243 16055009 ~ 16055732 (+) True XLOC_025183
TCONS_00052333 lncRNA upstream 975573 15865921 ~ 15866402 (+) True XLOC_025180
TCONS_00049755 lncRNA downstream 10860 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00052632 lncRNA downstream 11953 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00052633 lncRNA downstream 12216 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00049777 lncRNA downstream 790263 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00049802 lncRNA downstream 1142570 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00049752 mRNA upstream 67901 16771797 ~ 16774074 (+) True XLOC_025195
TCONS_00049751 mRNA upstream 71657 16762483 ~ 16770318 (+) True XLOC_025194
TCONS_00049750 mRNA upstream 91939 16724614 ~ 16750036 (+) True XLOC_025193
TCONS_00049748 mRNA upstream 95479 16722014 ~ 16746496 (+) False XLOC_025193
TCONS_00049747 mRNA upstream 163297 16668609 ~ 16678678 (+) True XLOC_025192
TCONS_00049756 mRNA downstream 58685 16922226 ~ 16973125 (+) True XLOC_025198
TCONS_00049757 mRNA downstream 112554 16976095 ~ 17012340 (+) True XLOC_025199
TCONS_00049759 mRNA downstream 167124 17030665 ~ 17095351 (+) False XLOC_025200
TCONS_00049758 mRNA downstream 167124 17030665 ~ 17095351 (+) False XLOC_025200
TCONS_00049760 mRNA downstream 167124 17030665 ~ 17107445 (+) False XLOC_025200
TCONS_00049749 other upstream 112960 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 163325 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049741 other upstream 253346 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049736 other upstream 468848 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049721 other upstream 1067797 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049766 other downstream 531698 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049769 other downstream 608606 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049790 other downstream 1014951 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049819 other downstream 1573944 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 1892721 18756262 ~ 18769951 (+) True XLOC_025228

Expression Profile

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